Browse Element(s) Details


Os.27607.1.A1_at

Description gb:AK100296.1
DB_XREF= gi:32985505
TID=Os.27607.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27607 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0684B02.13 (P0684B02.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023077A12, full insert sequence.
FL= gb:AK100296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5086011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50830OsAffx.23740.1.S1_at11/111+29518922..29521531expressed protein
LOC_Os01g50840Os.1880.2.S1_a_at11/111+29528956..29530650expressed protein
LOC_Os01g50850NANA1+29535834..29536220hypothetical protein
LOC_Os01g50860Os.27607.2.S1_x_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50860Os.27607.1.A1_at11/111+29543795..29548654CBS domain containing protein, expressed
LOC_Os01g50870NANA1+29550035..29550346hypothetical protein
LOC_Os01g50880OsAffx.11551.1.S1_at11/111+29553402..29553811hypothetical protein
LOC_Os01g50890NANA1+29557804..29558064hypothetical protein
LOC_Os01g50900Os.47750.1.A1_at11/111+29558747..29559638Germin-like protein subfamily T member 2 precursor, putative, expressed
LOC_Os01g50910Os.10933.1.S1_at11/111+29559895..29561103Late embryogenesis abundant protein, expressed
LOC_Os01g50930Os.7502.2.S1_at11/111+29566915..29573689expressed protein
LOC_Os01g50930Os.7502.1.S1_at11/111+29566915..29573689expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0009507cellular_componentchloroplast
GO:0016020cellular_componentmembrane
GO:0005247molecular_functionvoltage-gated chloride channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27607.1.A1_at--601--2191Chr01:29548236..29548260 (25 bp)
ACACAGTTCTGATATTTCATCCCAG
LOC_Os01g50860
Os.27607.1.A1_at--1033--8071Chr01:29548266..29548290 (25 bp)
GGAGCTGTTCAGAATTGCCCAGCAT
LOC_Os01g50860
Os.27607.1.A1_at--1141--5191Chr01:29548277..29548301 (25 bp)
GAATTGCCCAGCATCTGTGTACAAG
LOC_Os01g50860
Os.27607.1.A1_at--169--8751Chr01:29548294..29548318 (25 bp)
TGTACAAGTGGCCAACGCTTCGGAC
LOC_Os01g50860
Os.27607.1.A1_at--767--3171Chr01:29548306..29548330 (25 bp)
CAACGCTTCGGACTCTTTTAACATT
LOC_Os01g50860
Os.27607.1.A1_at--957--2411Chr01:29548367..29548391 (25 bp)
CAGAAACGTACTGTTGAAGGGCCTT
LOC_Os01g50860
Os.27607.1.A1_at--939--611Chr01:29548413..29548437 (25 bp)
ATGCGGTTTTATTGCACCAGCGTGC
LOC_Os01g50860
Os.27607.1.A1_at--177--5091Chr01:29548426..29548450 (25 bp)
GCACCAGCGTGCTACAAGTATTTTT
LOC_Os01g50860
Os.27607.1.A1_at--287--9591Chr01:29548459..29548483 (25 bp)
TCATTTTGTCAAACTTGCGTTTTCC
LOC_Os01g50860
Os.27607.1.A1_at--995--371Chr01:29548526..29548550 (25 bp)
ATCTAGGAAGCGAGACCTCAAGGTA
LOC_Os01g50860
Os.27607.1.A1_at--856--8051Chr01:29548565..29548589 (25 bp)
GGAGCACGAGGTCAATTGGTCAAAT
LOC_Os01g50860
Target Sequence 
ACACAGTTCTGATATTTCATCCCAGAACTGGGAGCTGTTCAGAATTGCCCAGCATCTGTGTACAAGTGGCCAACGCTTCG
GACTCTTTTAACATTTTTACCAGGTTGTTTTGTTAACTTCAGAATGTAACTCAGAAACGTACTGTTGAAGGGCCTTTAGT
TTTGCACAAGTGGATATATGCGGTTTTATTGCACCAGCGTGCTACAAGTATTTTTAGATGACATCATTTTGTCAAACTTG
CGTTTTCCNCTGTACGATTTATTGCAAGAGCAACAAAATNANGNATATTCATCTAGGAAGCGAGACCTCAAGGTAGATCA
ATGTAATCTGGAGCACGAGGTCAATTGGTCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27607.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis