Browse Element(s) Details


Os.27608.1.A1_at

Description gb:CB679743
DB_XREF= gi:29683468
DB_XREF=OSJNEf03J24.r
CLONE=OSJNEf03J24
TID=Os.27608.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27608 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198091.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3330011/11Tat pathway signal sequence family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os05g33280Os.5229.1.S1_at11/115+19424390..19425948expressed protein
LOC_Os05g33290OsAffx.14935.1.S1_at10/115+19426854..19431019expressed protein
LOC_Os05g33300Os.27608.1.A1_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_s_at11/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300OsAffx.14936.1.S1_at9/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33300Os.51103.1.S1_at7/115+19431159..19434260Tat pathway signal sequence family protein, expressed
LOC_Os05g33310Os.12714.1.S1_at1/115+19442499..19445837oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os05g33320OsAffx.14937.1.S1_at10/115+19448044..19450049expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27608.1.A1_at--284--1551Chr05:19432600..19432624 (25 bp)
AGCATTGATTCACAGAGAGGCGACA
LOC_Os05g33300
Os.27608.1.A1_at--1146--6011Chr05:19432614..19432638 (25 bp)
GAGAGGCGACAAACATTACTTTTTT
LOC_Os05g33300
Os.27608.1.A1_at--711--10371Chr05:19432634..19432658 (25 bp)
TTTTTTGCTCCAACTGACTAGTAGA
LOC_Os05g33300
Os.27608.1.A1_at--627--5471Chr05:19432657..19432681 (25 bp)
GAAACTGGTACTGCACTAGTAGGTG
LOC_Os05g33300
Os.27608.1.A1_at--419--3711Chr05:19432672..19432696 (25 bp)
CTAGTAGGTGCAGGAGTGTTCATAA
LOC_Os05g33300
Os.27608.1.A1_at--623--5011Chr05:19432681..19432705 (25 bp)
GCAGGAGTGTTCATAATGTTTCTTT
LOC_Os05g33300
Os.27608.1.A1_at--409--6831Chr05:19432698..19432722 (25 bp)
GTTTCTTTATATCAACAATTCTCTG
LOC_Os05g33300
Os.27608.1.A1_at--1019--10571Chr05:19432716..19432740 (25 bp)
TTCTCTGTAATCAAGGCCCAAAGAC
LOC_Os05g33300
Os.27608.1.A1_at--53--3091Chr05:19432724..19432748 (25 bp)
AATCAAGGCCCAAAGACATGTTTTT
LOC_Os05g33300
Os.27608.1.A1_at--894--10431Chr05:19432763..19432787 (25 bp)
TTATGTTGCACACAATCAGCCAAAA
LOC_Os05g33300
Os.27608.1.A1_at--828--3271Chr05:19432804..19432828 (25 bp)
CAAACATTGGTTTGTAGGCCAAAGA
LOC_Os05g33300
Target Sequence 
AGCATTGATTCACAGAGAGGCGACAAACATTACTTTTTTTGCTCCAACTGACTAGTAGAAACTGGTACTGCACTAGTAGG
TGCAGGAGTGTTCATAATGTTTCTTTATATCAACAATTCTCTGTAATCAAGGCCCAAAGACATGTTTTTTATTTTGAATT
ATTTTATGTTGCACACAATCAGCCAAAAAATTTATGTTTTGACACAAACATTGGTTTGTAGGCCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27608.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis