Browse Element(s) Details


Os.27638.1.S1_at

Description gb:AK070485.1
DB_XREF= gi:32980509
TID=Os.27638.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013053K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049P18, full insert sequence.
FL= gb:AK070485.1 gb:AK071893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4820011/11Glutamate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48160Os.51473.2.S1_x_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48160Os.51473.1.S1_at11/115+27522661..27524278ferredoxin, putative, expressed
LOC_Os05g48170OsAffx.3852.1.S1_at2/115+27525868..27529530retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g48180OsAffx.27363.1.S1_at11/115+27530196..27531182hypothetical protein
LOC_Os05g48190OsAffx.15143.1.S1_at11/115+27533800..27536070hypothetical protein
LOC_Os05g48190OsAffx.1263.1.S1_at1/115+27533800..27536070hypothetical protein
LOC_Os05g48200Os.27638.1.S1_at11/115+27547570..27553180Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os05g48210Os.27660.1.S1_at11/115+27554824..27555702expressed protein
LOC_Os05g48220Os.39014.1.S1_at8/115+27557400..2755946460S ribosomal protein L33-B, putative, expressed
LOC_Os05g48230Os.25211.1.S1_at11/115+27559844..27564573expressed protein
LOC_Os05g48240Os.8710.1.S1_at11/115+27564708..27570395Dynamin-related protein 1A, putative, expressed
LOC_Os05g48250NANA5+27574407..27575238hypothetical protein
LOC_Os05g48260OsAffx.27365.1.S1_at11/115+27577574..27581528condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006537biological_processglutamate biosynthesis
GO:0009853biological_processphotorespiration
GO:0042128biological_processnitrate assimilation
GO:0009536cellular_componentplastid
GO:0016040molecular_functionglutamate synthase (NADH) activity
GO:0016041molecular_functionglutamate synthase (ferredoxin) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27638.1.S1_at--826--9291Chr05:27552461..27552605 (25 bp)
TCCCGAAGCGACTGTTGCTAACAAG
LOC_Os05g48200
Os.27638.1.S1_at--454--6671Chr05:27552594..27552618 (25 bp)
GTTGCTAACAAGCTGGGTCTAGAAC
LOC_Os05g48200
Os.27638.1.S1_at--970--8151Chr05:27552651..27552675 (25 bp)
GGAAACTTTGCGACCAATGTGGAAG
LOC_Os05g48200
Os.27638.1.S1_at--450--8551Chr05:27552689..27552713 (25 bp)
TGGAGACTGCAGACGTGGGCAATCA
LOC_Os05g48200
Os.27638.1.S1_at--31--4771Chr05:27552747..27552771 (25 bp)
GCTGCAGCAGCCGTAGACAATTACC
LOC_Os05g48200
Os.27638.1.S1_at--693--8111Chr05:27552809..27552833 (25 bp)
GGACATTGCTGTCTCAAGTGAAGGT
LOC_Os05g48200
Os.27638.1.S1_at--351--831Chr05:27552825..27552849 (25 bp)
AGTGAAGGTCTGGTCCAACCCGTAG
LOC_Os05g48200
Os.27638.1.S1_at--581--3251Chr05:27552840..27552864 (25 bp)
CAACCCGTAGTTGCATAGGCCGAGA
LOC_Os05g48200
Os.27638.1.S1_at--860--10091Chr05:27552855..27552879 (25 bp)
TAGGCCGAGAGAACATTTCTGCAAT
LOC_Os05g48200
Os.27638.1.S1_at--692--1191Chr05:27552908..27552932 (25 bp)
AGTAGGGCCATGCATTTTTTAGCTA
LOC_Os05g48200
Os.27638.1.S1_at--129--10071Chr05:27553017..27553041 (25 bp)
TTGCGGACGCGTATATTTTTTCCCT
LOC_Os05g48200
Target Sequence 
TCCCGAAGCGACTGTTGCTAACAAGCTGGGTCTAGAACAAGACATGAGGTCAAACTTCAAAGCTCAATTTGGAAACTTTG
CGACCAATGTGGAAGGTGTATTTGCTGCTGGAGACTGCAGACGTGGGCAATCACTGGTTGTTTGGGCCATCACAGAGGGG
CGCCAAGCTGCAGCAGCCGTAGACAATTACCTGTCGAAGGATGATGAAGGTGAAACCAATGGCACAGAGGACATTGCTGT
CTCAAGTGAAGGTCTGGTCCAACCCGTAGTTGCATAGGCCGAGAGAACATTTCTGCAATTTTGATACAGCATTGATGATG
CGAAGATAGTAGGGCCATGCATTTTTTAGCTATAAAAAGGTAAAATAAAGGGCCTGTAAATAATTTACAAGAAAAGGGGG
CCCTTTTGTTTATATAAGTATGATAAAAGGGAAATTTTGCGGACGCGTATATTTTTTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis