Browse Element(s) Details


Os.27650.1.S1_at

Description gb:AK111594.1
DB_XREF= gi:37988257
TID=Os.27650.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) serinethreonine kinase-like protein (P0506F02.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091C19, full insert sequence.
FL= gb:AK111594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4356010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43480OsAffx.28887.1.S1_at11/117+26024482..26026565hypothetical protein
LOC_Os07g43490OsAffx.9077.1.S1_s_at11/117+26028836..26029606hypothetical protein
LOC_Os07g43500NANA7+26031490..26033546hypothetical protein
LOC_Os07g43510Os.41122.1.S1_at5/117+26034746..2603524640S ribosomal protein S9, putative
LOC_Os07g43519Os.41122.1.S1_at2/117+26036782..26037535NA
LOC_Os07g43530Os.34549.1.S1_at10/117+26037984..26040531Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g43540OsAffx.16697.1.S1_at10/117+26042848..26045797origin recognition complex subunit 6, putative, expressed
LOC_Os07g43560Os.27650.1.S1_at10/117+26050527..26054189Protein kinase domain containing protein, expressed
LOC_Os07g43570Os.6898.1.S1_at11/117+26057670..26061466Protein kinase domain containing protein, expressed
LOC_Os07g43580Os.25588.2.S1_x_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43580Os.25588.1.S1_a_at11/117+26073624..26075445Myb30, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27650.1.S1_at--216--8231Chr07:26051070..26051094 (25 bp)
GGCAATGAAAACTATCACGGAGATG
LOC_Os07g43560
Os.27650.1.S1_at--1066--4391Chr07:26050947..26050971 (25 bp)
GCCAACTCTGTCAATGATCAATATC
LOC_Os07g43560
Os.27650.1.S1_at--161--3891Chr07:26050940..26050964 (25 bp)
CTGTCAATGATCAATATCATGCTTG
LOC_Os07g43560
Os.27650.1.S1_at--731--631Chr07:26050728..26050752 (25 bp)
ATGCATTCCTTGTTTGTATGAATAT
LOC_Os07g43560
Os.27650.1.S1_at--6--4931Chr07:26050726..26050750 (25 bp)
GCATTCCTTGTTTGTATGAATATGT
LOC_Os07g43560
Os.27650.1.S1_at--1143--1511Chr07:26050611..26050635 (25 bp)
ACTTAATTGTAAGACAAACTACTTG
LOC_Os07g43560
Os.27650.1.S1_at--1074--3411Chr07:26050534..26050558 (25 bp)
CAGAGGACCGACTTGTCTGACGTTT
LOC_Os07g43560
Os.27650.1.S1_at--984--6171Chr07:26050532..26050556 (25 bp)
GAGGACCGACTTGTCTGACGTTTGA
LOC_Os07g43560
Os.27650.1.S1_at--335--951Chr07:26050531..26050555 (25 bp)
AGGACCGACTTGTCTGACGTTTGAT
LOC_Os07g43560
Os.27650.1.S1_at--262--5831Chr07:26050529..26050553 (25 bp)
GACCGACTTGTCTGACGTTTGATGA
LOC_Os07g43560
Os.27650.1.S1_at--256--4231Chr07:26050527..26050551 (25 bp)
CCGACTTGTCTGACGTTTGATGAGC
NONE
Target Sequence 
GGCAATGAAAACTATCACGGAGATGGTTGACCCATATTTGAGGAGTGATTCTTCCTCTCTAGATGAGATTTTGAGGTGCA
TTCATGTTGGACTTGTATGTGTCCAAGAGGACCCTATGGATAGGCCAACTCTGTCAATGATCAATATCATGCTTGACGGC
AATACAGTTTCAGCTAAAGCTCCATCGAGACCTGCATTTTTCANAGAAATGTTGGGCAATATTAATATTGGTTCAAGCAT
GTATTCCCAACCATACCCTGTAACCGACTCCACGGCCAAGCACTCGANGGCCATGTCACTAAATGATGTGACAGTAACAG
AGCCTGAACCAAGATAAGTCATATGCATTCCTTGTTTGTATGAATATGTTGATGCACGAGGAAATAACTATGTGATCTGT
AATTCGAGTTAGATGACTCCATGGTTGTGTATTTATTGTATTTTCAGGACATATGTAGTACTTAATTGTAAGACAAACTA
CTTGTCTTGAGAGATAATATCTGTATTATATTATGAAGACGTATAAAAGNAACTCNCAGAGGACCGACTTGTCTGACGTT
TGATGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis