Browse Element(s) Details


Os.27651.1.S1_at

Description gb:AK067221.1
DB_XREF= gi:32977239
TID=Os.27651.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1261C08.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097C11, full insert sequence.
FL= gb:AK099268.1 gb:AK067221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1648011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16420OsAffx.20370.1.S1_at11/113+9041840..9042763retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16430Os.27006.1.S1_at11/113+9043907..9047100Sigma-70 region 3 family protein, expressed
LOC_Os03g16440Os.12583.1.S1_at11/113+9047443..9053002chloroplastic outer envelope membrane protein, putative, expressed
LOC_Os03g16450Os.12583.3.S1_x_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16450Os.12583.2.S1_at11/113+9053364..9055860pentatricopeptide, putative, expressed
LOC_Os03g16460Os.38256.1.S1_at11/113+9055024..9058460HEAT repeat family protein, expressed
LOC_Os03g16470Os.27598.1.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.3.S1_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.1.S1_a_at11/113+9058653..9060595expressed protein
LOC_Os03g16470Os.27598.2.S1_at10/113+9058653..9060595expressed protein
LOC_Os03g16480Os.27651.1.S1_at11/113+9063531..9065005Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g16490NANA3+9068830..9071493hypothetical protein
LOC_Os03g16500Os.32109.1.S1_at11/113+9075454..9084043Eukaryotic aspartyl protease family protein, expressed
LOC_Os03g16530NANA3+9086606..9094817retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27651.1.S1_at--257--3971Chr03:9064410..9064434 (25 bp)
CGGTTGTCTACACTGAACTGGATGG
LOC_Os03g16480
Os.27651.1.S1_at--663--4091Chr03:9064504..9064528 (25 bp)
CGAAGGTCGGATTCGCCGTGTATTT
LOC_Os03g16480
Os.27651.1.S1_at--548--9331Chr03:9064516..9064540 (25 bp)
TCGCCGTGTATTTAGGAATCTGTTT
LOC_Os03g16480
Os.27651.1.S1_at--1075--3851Chr03:9064535..9064559 (25 bp)
CTGTTTGGTTGTTTTGGTCGGAGCA
LOC_Os03g16480
Os.27651.1.S1_at--157--1531Chr03:9064556..9064580 (25 bp)
AGCAGTCGGCCGGAGAGTTCATCAT
LOC_Os03g16480
Os.27651.1.S1_at--923--1211Chr03:9064571..9064595 (25 bp)
AGTTCATCATCGCAGTCCCGTAGTG
LOC_Os03g16480
Os.27651.1.S1_at--127--7251Chr03:9064585..9064609 (25 bp)
GTCCCGTAGTGGCTGAACGCAGTTT
LOC_Os03g16480
Os.27651.1.S1_at--260--5411Chr03:9064599..9064623 (25 bp)
GAACGCAGTTTTCTCGGTAACTCGA
LOC_Os03g16480
Os.27651.1.S1_at--935--7831Chr03:9064614..9064638 (25 bp)
GGTAACTCGATCTCCTATTGATAGT
LOC_Os03g16480
Os.27651.1.S1_at--890--6811Chr03:9064749..9064773 (25 bp)
GTTTATTTAGAGATGGCCACGAGCA
LOC_Os03g16480
Os.27651.1.S1_at--161--7431Chr03:9064930..9064954 (25 bp)
GTGTATATACTGGATTGGGCCAAGA
LOC_Os03g16480
Target Sequence 
CGGTTGTCTACACTGAACTGGATGGGGGCTTCAGTAACGGCGTCGGGCCGAGGCGGGTAACGTGGCCGGAGGGCGACGGC
CATGTCGATGGCGGCGAAGGTCGGATTCGCCGTGTATTTAGGAATCTGTTTGGTTGTTTTGGTCGGAGCAGTCGGCCGGA
GAGTTCATCATCGCAGTCCCGTAGTGGCTGAACGCAGTTTTCTCGGTAACTCGATCTCCTATTGATAGTGGTGAATAAGT
AGGATTTAGTATAAGAAGGGAACCCAGATTATAAGTTCTTGGGACTTTTGATGTAAATGAAAACCTTGCGATTTTTTTCC
ACTTTGTCCCGTTTTAAGAGTTTATTTAGAGATGGCCACGAGCAAAATAGCAAACAACTGGAAATTAGTTTGGAAAGCAA
ATTAGGAGGAAGAAGCNCAGGACTTCATGAAAGGAATGACAGTGAATTTATTGGGTAAATCAATTGTTGCAATGTTGTAG
TCAGAGAGAACAAAGTGTTGTTCTTNCCTCTGTACTGTTTGTGTATATACTGGATTGGGCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis