Browse Element(s) Details


Os.27662.1.S1_at

Description gb:AK073946.1
DB_XREF= gi:32983969
TID=Os.27662.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27662 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071N19, full insert sequence.
FL= gb:AK073946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4214011/11G-patch domain containing protein, expressed
LOC_Os01g018401/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g42090Os.3377.1.S1_at11/1112+26067505..2606993737 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os12g42100OsAffx.7861.1.S1_x_at5/1112+26071350..26075120hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_x_at10/1112+26076981..26082102hypothetical protein
LOC_Os12g42110OsAffx.7861.1.S1_at9/1112+26076981..26082102hypothetical protein
LOC_Os12g42120OsAffx.20084.1.S1_at11/1112+26084259..26086439pentatricopeptide, putative
LOC_Os12g42130Os.50779.1.S1_at11/1112+26086767..26089282TRANSPARENT TESTA 12 protein, putative, expressed
LOC_Os12g42140Os.27662.1.S1_at11/1112+26090409..26093235G-patch domain containing protein, expressed
LOC_Os12g42150Os.20258.1.S1_at11/1112+26094981..26097138transducin family protein, putative, expressed
LOC_Os12g42160OsAffx.20085.1.S1_x_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42160Os.47736.1.S1_at11/1112+26097414..26102591kinesin motor protein, putative, expressed
LOC_Os12g42170NANA12+26104714..26105331hypothetical protein
LOC_Os12g42180Os.10241.1.S1_at11/1112+26105882..26108174ribosomal protein L14 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27662.1.S1_at--293--9011Chr12:26090985..26091009 (25 bp)
TGAAGGCCTTGAGGTGGTGCAACCT
LOC_Os12g42140
Os.27662.1.S1_at--739--3091Chr12:26090887..26090911 (25 bp)
AATACATGACTCACCATGCGGTGCC
LOC_Os12g42140
Os.27662.1.S1_at--1158--5071Chr12:26090858..26090882 (25 bp)
GCAGCCATGGCGGATATGAGCTTTA
LOC_Os12g42140
Os.27662.1.S1_at--290--992Chr12:25785920..25785944 (25 bp)
AGGAGTCTATCCAGGCATATGCAAT
NONE
Os.27662.1.S1_at--1113--4871Chr12:26090800..26090824 (25 bp)
GCTTATTGTTTATGCCCAGAGTTGG
LOC_Os12g42140
Os.27662.1.S1_at--389--4351Chr12:26090756..26090780 (25 bp)
CCAGTGTATGAGTTTGGCACCGTAA
LOC_Os12g42140
Os.27662.1.S1_at--816--8231Chr12:26090741..26090765 (25 bp)
GGCACCGTAAGTATTTGCATCGACT
LOC_Os12g42140
Os.27662.1.S1_at--350--531Chr12:26090723..26090747 (25 bp)
ATCGACTCTGTGAAGCGCCTACTCT
LOC_Os12g42140
Os.27662.1.S1_at--517--1131Chr12:26090666..26090690 (25 bp)
AGTGCTGTCTCTCTTACACAATTGA
LOC_Os12g42140
Os.27662.1.S1_at--826--8371Chr12:26090625..26090649 (25 bp)
GGCGAGGCAACGCTAGTTGATCATC
LOC_Os12g42140
Os.27662.1.S1_at--534--6652Chr01:455247..455404 (25 bp)
GTTGATCATCCTATTGTGTACTATT
LOC_Os01g01840
Target Sequence 
TGAAGGCCTTGAGGTGGTGCAACCTGGCGCTAGGGAAAATGTGGGCTACTTGAGAGCAACAGAGAAGAGGCAATTTGATG
CAGCACAGCAAGCATCACAATACATGACTCACCATGCGGTGCCAGGAGCAGCCATGGCGGATATGAGCTTTAAGGAGTCT
ATCCAGGCATATGCAATGGACCAAGGCTTATTGTTTATGCCCAGAGTTGGTAAATTCTACAATGGTATGCCAGTGTATGA
GTTTGGCACCGTAAGTATTTGCATCGACTCTGTGAAGCGCCTACTCTACGCACAACTTCAAGAAGGAATTGAGAGATGGA
GTGCTGTCTCTCTTACACAATTGATAGAAATGAACCGGAAGGCGAGGCAACGCTAGTTGATCATCCTATTGTGTACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis