Browse Element(s) Details


Os.27674.1.S1_at

Description gb:AK073151.1
DB_XREF= gi:32983174
TID=Os.27674.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033010C22, full insert sequence.
FL= gb:AK073151.1 gb:AK099385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2966011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29610OsAffx.31929.1.S1_at10/1112+17655409..17659727hypothetical protein
LOC_Os12g29620OsAffx.31930.1.S1_x_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31930.1.S1_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31931.1.S1_x_at2/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.7292.1.S1_x_at1/1112+17662524..17664058hypothetical protein
LOC_Os12g29630OsAffx.23366.2.S1_s_at1/1112+17665149..17668715transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640Os.46314.3.S1_at2/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640OsAffx.7362.1.S1_x_at1/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29650OsAffx.31931.1.S1_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31931.1.S1_x_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31930.1.S1_x_at1/1112+17674737..17676629hypothetical protein
LOC_Os12g29660Os.27674.1.S1_at11/1112+17678736..17688870DEAD/DEAH box helicase family protein, expressed
LOC_Os12g29670Os.9359.1.S1_at11/1112+17689036..17692280expressed protein
LOC_Os12g29680OsAffx.19886.1.S1_at10/1112+17695399..17700073hypothetical protein
LOC_Os12g29690OsAffx.31932.1.S1_at11/1112+17701955..17706469NB-ARC domain containing protein
LOC_Os12g29700OsAffx.24866.1.S1_at9/1112+17711461..17716647retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27674.1.S1_at--21--7091Chr12:17679344..17679368 (25 bp)
GTCAATCGCTAGTCGATGTGGCTTA
LOC_Os12g29660
Os.27674.1.S1_at--184--5351Chr12:17679169..17679193 (25 bp)
GAAGCAGGGCCGCTCCTTAAAGAAA
LOC_Os12g29660
Os.27674.1.S1_at--192--5951Chr12:17678945..17679130 (25 bp)
GAGCAAATCCAGGTACAACCGCCGA
LOC_Os12g29660
Os.27674.1.S1_at--1050--6911Chr12:17678918..17678942 (25 bp)
GTAGAAGACCCGCTAACTTGTAGTA
LOC_Os12g29660
Os.27674.1.S1_at--128--2071Chr12:17678903..17678927 (25 bp)
ACTTGTAGTAGCGTGTTTTCCTCAC
LOC_Os12g29660
Os.27674.1.S1_at--780--1571Chr12:17678894..17678918 (25 bp)
AGCGTGTTTTCCTCACTGGGAATTT
LOC_Os12g29660
Os.27674.1.S1_at--607--3131Chr12:17678874..17678898 (25 bp)
AATTTATTGCATTCCCTTGTATCAA
LOC_Os12g29660
Os.27674.1.S1_at--523--3131Chr12:17678851..17678875 (25 bp)
AATTTTGACCGACTGATCCTGAAGA
LOC_Os12g29660
Os.27674.1.S1_at--72--771Chr12:17678825..17678849 (25 bp)
ATGTCAGGATATGTTGTGCCCATCT
LOC_Os12g29660
Os.27674.1.S1_at--741--6631Chr12:17678813..17678837 (25 bp)
GTTGTGCCCATCTTGTATTTACTAG
LOC_Os12g29660
Os.27674.1.S1_at--765--2231Chr12:17678782..17678806 (25 bp)
ACAATTTTCTCATATCGTGCATTAA
LOC_Os12g29660
Target Sequence 
GTCAATCGCTAGTCGATGTGGCTTATCGTAGAGCAAAATCAATGAAGGCCAGCGGTAAAAGGGGTGCTGGCACTGGCAAA
GGAAAGAATGATAAAAAGGCAAAACAACATTCTGGAAAGGGCCCAACTAGGCAAGAGGAGATGCAAGAGTTGTTCCAGAA
TGATATGAGTGAATGGAAGCAGGGCCGCTCCTTAAAGAAAAATAATGTTATGCGAAAGAAATCGAAAAATTCTTTTAAGA
GCAAATCCAGGTACAACCGCCGAAAGTAGAAGACCCGCTAACTTGTAGTAGCGTGTTTTCCTCACTGGGAATTTATTGCA
TTCCCTTGTATCAATTTTGACCGACTGATCCTGAAGAAATGTCAGGATATGTTGTGCCCATCTTGTATTTACTAGTTATA
TACAATTTTCTCATATCGTGCATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis