Browse Element(s) Details


Os.27675.1.S1_at

Description gb:AK107976.1
DB_XREF= gi:32993185
TID=Os.27675.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-E01, full insert sequence.
FL= gb:AK107976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2894011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28870NANA11+16215824..16216669hypothetical protein
LOC_Os11g28880NANA11+16217226..16218396hypothetical protein
LOC_Os11g28890NANA11+16218742..16219935hypothetical protein
LOC_Os11g28900NANA11+16223493..16224101retrotransposon protein, putative, unclassified
LOC_Os11g28910Os.22662.1.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.22662.2.S1_at11/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28910Os.52981.1.S1_at10/1111+16226763..16233624transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os11g28920OsAffx.31193.1.S1_at11/1111+16235241..16235519hypothetical protein
LOC_Os11g28930OsAffx.19060.1.S1_at11/1111+16238136..16239942hypothetical protein
LOC_Os11g28940Os.27675.1.S1_at11/1111+16241657..16242792expressed protein
LOC_Os11g28950OsAffx.7240.1.S1_at11/1111+16249995..16258014NB-ARC domain containing protein, expressed
LOC_Os11g28970Os.54774.1.S1_x_at3/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28970Os.54774.1.S1_at2/1111+16260717..16262339retrotransposon, putative, centromere-specific
LOC_Os11g28980OsAffx.7241.1.S1_at11/1111+16264805..16270349Gpi16 subunit, GPI transamidase component family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27675.1.S1_at--808--8991Chr11:16242279..16242303 (25 bp)
TGAAGAACCTGTGCGGCTGCAGCGT
LOC_Os11g28940
Os.27675.1.S1_at--135--4571Chr11:16242387..16242411 (25 bp)
GCGACTACTACCTGGTGAACGGCGG
LOC_Os11g28940
Os.27675.1.S1_at--869--8631Chr11:16242455..16242479 (25 bp)
TGGGACCACTTCTTCCAGATCACTC
LOC_Os11g28940
Os.27675.1.S1_at--137--6451Chr11:16242472..16242496 (25 bp)
GATCACTCCCCGGAGCATGGAGGAA
LOC_Os11g28940
Os.27675.1.S1_at--1051--3491Chr11:16242487..16242511 (25 bp)
CATGGAGGAAGATCAGTGCTAGCTA
LOC_Os11g28940
Os.27675.1.S1_at--310--10191Chr11:16242510..16242534 (25 bp)
TATAGCTAGCTACATACACTTGGGT
LOC_Os11g28940
Os.27675.1.S1_at--775--8211Chr11:16242553..16242577 (25 bp)
GGAATAATATTCTTGCGTGAGCTAA
LOC_Os11g28940
Os.27675.1.S1_at--1014--4651Chr11:16242567..16242591 (25 bp)
GCGTGAGCTAATACACATGTGTTGC
LOC_Os11g28940
Os.27675.1.S1_at--332--3511Chr11:16242582..16242606 (25 bp)
CATGTGTTGCAGTGTTAGCTAGTAC
LOC_Os11g28940
Os.27675.1.S1_at--150--6831Chr11:16242732..16242756 (25 bp)
GTTTAGCTCAATAATGTATACGGTC
LOC_Os11g28940
Os.27675.1.S1_at--417--8771Chr11:16242746..16242770 (25 bp)
TGTATACGGTCTTTTGCATCTCAAT
LOC_Os11g28940
Target Sequence 
TGAAGAACCTGTGCGGCTGCAGCGTCAGGGACGTCCGGCTCGACGGCGGCGGCTTCGCGACGACGGTGGAGGTCGACCCG
GCCGTGTTCCGCGCCGCCGACGACGGCGGCGACTACTACCTGGTGAACGGCGGCGGGCCGATCGCCAGCATGGCCACCGT
CAGCTTCCGCTACACCTGGGACCACTTCTTCCAGATCACTCCCCGGAGCATGGAGGAAGATCAGTGCTAGCTATAGCTAG
CTACATACACTTGGGTACATATGCAAAGTTGGAGGGAATAATATTCTTGCGTGAGCTAATACACATGTGTTGCAGTGTTA
GCTAGTACTATATATACTAATGTTCCATGAAAAGCTAGGTCAAGTGTGGAAGAATTATTCCTGCATGGGTTTATATATGT
GTAGTACAGTGGTCTAATGTGTACTGAGTGAGGGATCGAATATTACAAAAAAAGTTTAGCTCAATAATGTATACGGTCTT
TTGCATCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis