Browse Element(s) Details


Os.27712.1.S1_at

Description gb:AK120445.1
DB_XREF= gi:37990068
TID=Os.27712.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) choline monooxygenase (CMO1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099F05, full insert sequence.
FL= gb:AK120445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4851011/11choline monooxygenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48470NANA6+29321136..29327225retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48480NANA6+29327608..29328060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48490Os.40855.2.S1_x_at10/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_x_at4/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_at1/116+29333887..29336235hypothetical protein
LOC_Os06g48500Os.46941.1.S1_s_at11/116+29340928..29342969expressed protein
LOC_Os06g48500Os.28181.1.A1_at11/116+29340928..29342969expressed protein
LOC_Os06g48510Os.27712.2.S1_x_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48510Os.27712.1.S1_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48520NANA6+29351932..29355138NB-ARC domain containing protein
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed
LOC_Os06g48540OsAffx.20823.2.S1_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540OsAffx.20823.2.S1_x_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27712.1.S1_at--351--9431Chr06:29350069..29350093 (25 bp)
TCTGCTTTTAACTTGTCAAACAACA
LOC_Os06g48510
Os.27712.1.S1_at--163--7051Chr06:29350101..29350125 (25 bp)
GTAACGTGTACTCATGTACCACTTT
LOC_Os06g48510
Os.27712.1.S1_at--160--3431Chr06:29350113..29350137 (25 bp)
CATGTACCACTTTTAGTTAACCTGT
LOC_Os06g48510
Os.27712.1.S1_at--552--10031Chr06:29350126..29350150 (25 bp)
TAGTTAACCTGTTTTTGCTTAAGAT
LOC_Os06g48510
Os.27712.1.S1_at--941--1251Chr06:29350147..29350171 (25 bp)
AGATTATAGTTCATCATAGGCGTAC
LOC_Os06g48510
Os.27712.1.S1_at--895--2991Chr06:29350182..29350206 (25 bp)
AATGATCTGCAAACATAGTGATGTC
LOC_Os06g48510
Os.27712.1.S1_at--690--6671Chr06:29350218..29350242 (25 bp)
GTTGCTGTTAGCTTCATAATTTACT
LOC_Os06g48510
Os.27712.1.S1_at--130--10351Chr06:29350237..29350261 (25 bp)
TTTACTCAAATTCCCCTCTGAAACA
LOC_Os06g48510
Os.27712.1.S1_at--717--2991Chr06:29350265..29350289 (25 bp)
AATGATTTGGTATGTTGCTGTGTGC
LOC_Os06g48510
Os.27712.1.S1_at--413--4371Chr06:29350314..29350338 (25 bp)
CCACATTGAATATGCAGGACGACCA
LOC_Os06g48510
Os.27712.1.S1_at--1156--9691Chr06:29351086..29351110 (25 bp)
TCAAACTGGTTCTTCAGTCTTCACA
LOC_Os06g48510
Target Sequence 
TCTGCTTTTAACTTGTCAAACAACAAGAGTTAGTAACGTGTACTCATGTACCACTTTTAGTTAACCTGTTTTTGCTTAAG
ATTATAGTTCATCATAGGCGTACTAAATGGTTTAATGATCTGCAAACATAGTGATGTCTTTGGTTAGATGTTGCTGTTAG
CTTCATAATTTACTCAAATTCCCCTCTGAAACAAGTAATGATTTGGTATGTTGCTGTGTGCTGTAATTGTGGTCAATGAC
TTAATCCACATTGAATATGCAGGACGACCAGAATTTTATTGAGAGCAGCTTAAAAGACAGCGAACAAGTACAGATGGAAG
ACATTGCACTTTGCGAAGGAGTTCAGCGGGGCCTGGAATCACCAGCCTACAGTGTGGGAAGATATGCACCATCAGTGGAG
ATGGCCATGCACCACTTCCACTGCCTCTTACATGCCAATCTTAGTGGTGACTGGTGAGTGATTTCTATGTGCATATCTGA
TTGGATTTATGCATCACAAAATTTATGTGCATATCTGCAGTATTTTCATTACTTGTACATTGTAAAGTGAAAACACATAG
GAATGTAATCAAACTGGTTCTTCAGTCTTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis