Browse Element(s) Details


Os.27779.1.S1_at

Description gb:CB634987
DB_XREF= gi:29629978
DB_XREF=OSIIEb14O09.r
CLONE=OSIIEb14O09
TID=Os.27779.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1701011/11Phospholipid-transporting ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16990Os.51519.1.S1_at3/111+9724476..9725022expressed protein
LOC_Os01g17000Os.35540.1.S1_at11/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17000Os.56959.1.S1_at1/111+9730610..9735004Dof domain, zinc finger family protein, expressed
LOC_Os01g17010Os.27779.1.S1_at11/111+9735221..9741506Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os01g17020Os.14702.1.S1_a_at10/111+9746901..9750547expressed protein
LOC_Os01g17030NANA1+9751320..9752575DnaJ domain containing protein
LOC_Os01g17040OsAffx.11084.2.S1_at10/111+9761751..9765259DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27779.1.S1_at--122--9471Chr01:9736648..9736672 (25 bp)
TCTGGGAGATCTATGGGCACTTGCC
LOC_Os01g17010
Os.27779.1.S1_at--1055--3311Chr01:9736631..9736655 (25 bp)
CACTTGCCCCTGTCATTGTTGTAAA
LOC_Os01g17010
Os.27779.1.S1_at--17--9911Chr01:9736601..9736625 (25 bp)
TACTAGCCATGGACATCTTTCGGTG
LOC_Os01g17010
Os.27779.1.S1_at--941--2631Chr01:9736531..9736555 (25 bp)
AACCATTTGCCTCTTTGTGATCGAC
LOC_Os01g17010
Os.27779.1.S1_at--95--7411Chr01:9736515..9736539 (25 bp)
GTGATCGACTCCATTTGGTTTCTTC
LOC_Os01g17010
Os.27779.1.S1_at--841--6771Chr01:9735556..9735580 (25 bp)
GTTACTGCTGCTTATCATTGTTGTT
LOC_Os01g17010
Os.27779.1.S1_at--416--6651Chr01:9735537..9735561 (25 bp)
GTTGTTGCAGCAATGGTACCACATT
LOC_Os01g17010
Os.27779.1.S1_at--106--5351Chr01:9735414..9735438 (25 bp)
GAAGTTCCAATGACACGTCTGCATG
LOC_Os01g17010
Os.27779.1.S1_at--794--2171Chr01:9735402..9735426 (25 bp)
ACACGTCTGCATGACCCAAGGAGAT
LOC_Os01g17010
Os.27779.1.S1_at--479--10391Chr01:9735329..9735353 (25 bp)
TTTTCGCCTCTTTGGTGTGTATACG
LOC_Os01g17010
Os.27779.1.S1_at--867--2891Chr01:9735285..9735309 (25 bp)
AAGGTGATAGGTTTAGCCTCCAAGA
LOC_Os01g17010
Target Sequence 
TCTGGGAGATCTATGGGCACTTGCCCCTGTCATTGTTGTAAATATGCTACTAGCCATGGACATCTTTCGGTGGAATTGGA
TCGTACATGCTTTTGNGTGGGGNAACAATAGCAGCAACAACCATTTGCCTCTTTGTGATCGACTCCATTTGGTTTCTTCC
TGGATATGGGGCCATCTTTCATATAATGGGGACAGGTTTGTTTTGGTTACTGCTGCTTATCATTGTTGTTGCAGCAATGG
TACCACATTTTGTAATCAAGGCCTTTACAGAGTATTTTACCCCCAGTGATATTCAAGTTGCCCGAGAGATAGAAAAATTC
GAGAATGTAAATCAGGTGAACCGTTCAGAAGTTCCAATGACACGTCTGCATGACCCAAGGAGATAGCTATAGAAAATTCT
CCTTTATAGAAATTTCTTTTTTTTTTCTGTTGTTTTTCGCCTCTTTGGTGTGTATACGAGTAAATTCATTTAGCACTAAG
GTGATAGGTTTAGCCTCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis