Browse Element(s) Details


Os.27823.1.S1_at

Description gb:AK101306.1
DB_XREF= gi:32986515
TID=Os.27823.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033M06, full insert sequence.
FL= gb:AK101306.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2338011/11RNA-metabolising metallo-beta-lactamase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g23350Os.15914.1.S1_at11/119+13874998..13878642glycosyl transferase family 20 protein, putative, expressed
LOC_Os09g23360Os.51840.1.S1_at11/119+13879664..13882886expressed protein
LOC_Os09g23370Os.16406.1.S1_at11/119+13886390..13889111expressed protein
LOC_Os09g23370Os.16406.2.S1_at9/119+13886390..13889111expressed protein
LOC_Os09g23380Os.27823.1.S1_at11/119+13890808..13896338RNA-metabolising metallo-beta-lactamase family protein, expressed
LOC_Os09g23390OsAffx.29985.1.S1_at11/119+13900842..13901812hypothetical protein
LOC_Os09g23400NANA9+13907220..13908604hypothetical protein
LOC_Os09g23410OsAffx.29986.1.S1_at10/119+13915019..13917896hypothetical protein
LOC_Os09g23420OsAffx.6373.1.S1_at11/119+13918743..13919868hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006378biological_processmRNA polyadenylylation
GO:0006379biological_processmRNA cleavage
GO:0008152biological_processmetabolism
GO:0005847cellular_componentmRNA cleavage and polyadenylation specificity factor complex
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27823.1.S1_at--1066--6751Chr09:13895746..13895770 (25 bp)
GTTACCCAGCTAACAACGAGACCGT
LOC_Os09g23380
Os.27823.1.S1_at--490--91Chr09:13895775..13895799 (25 bp)
ATTCCGACATCCCAGAACTTGAAAA
LOC_Os09g23380
Os.27823.1.S1_at--652--5311Chr09:13895942..13895966 (25 bp)
GAAGTCCAAGACTCCGAAGATTTTG
LOC_Os09g23380
Os.27823.1.S1_at--93--5731Chr09:13895951..13895975 (25 bp)
GACTCCGAAGATTTTGCGCGAGGAC
LOC_Os09g23380
Os.27823.1.S1_at--982--3791Chr09:13895987..13896011 (25 bp)
CTCGCTGGGCATGGAAACGCATTTT
LOC_Os09g23380
Os.27823.1.S1_at--67--4971Chr09:13896029..13896053 (25 bp)
GCATCCGTCCAGCATTGAGGTAAAA
LOC_Os09g23380
Os.27823.1.S1_at--858--2391Chr09:13896051..13896075 (25 bp)
AAACATACTGGTGAGTCCGCGGTGC
LOC_Os09g23380
Os.27823.1.S1_at--618--7251Chr09:13896065..13896089 (25 bp)
GTCCGCGGTGCAGCAGAGCAGTTTA
LOC_Os09g23380
Os.27823.1.S1_at--601--6811Chr09:13896085..13896109 (25 bp)
GTTTAGAACATTTAGACTGCGAGTG
LOC_Os09g23380
Os.27823.1.S1_at--486--10271Chr09:13896130..13896154 (25 bp)
TTTTCAACTACTCTCGACTTTGGAG
LOC_Os09g23380
Os.27823.1.S1_at--800--5671Chr09:13896145..13896169 (25 bp)
GACTTTGGAGACTTTTGAGAGGTAT
LOC_Os09g23380
Target Sequence 
GTTACCCAGCTAACAACGAGACCGTNTNTATTCCGACATCCCAGAACTTGAAAATAAACGCCNCGGAGAAGTTCATTGTG
AGCTTNTGCATGGATGAAACTGAAAATGATCCGCAGAAGCAGAACCTGAATTTTGGTGGNGACATNCCNCAAGGCTGCAG
GACTGAAGGAGTAGCTGAGGGCGTTNTTNTGATGGAGAAGTCCAAGACTCCGAAGATTTTGCGCGAGGACNNNCTGCTTC
NCTCGCTGGGCATGGAAACGCATTTTGTCCATTTTGAACCNCTGCATCCGTCCAGCATTGAGGTAAAACATACTGGTGAG
TCCGCGGTGCAGCAGAGCAGTTTAGAACATTTAGACTGCGAGTGAAATGAATGAACAATTNTTNTTTTCAACTACTCTCG
ACTTTGGAGACTTTTGAGAGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis