Browse Element(s) Details


Os.27859.1.S1_at

Description gb:AK072879.1
DB_XREF= gi:32982902
TID=Os.27859.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146C19, full insert sequence.
FL= gb:AK072879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g175401/11TBC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17550Os.23533.1.S1_at11/113+9730756..9734808Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g17560OsAffx.25123.1.S1_at11/113+9736057..9738381expressed protein
LOC_Os03g17570Os.51433.1.S1_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S2_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed
LOC_Os03g17570Os.8104.1.S1_a_at11/113+9738594..9747740Two-component response regulator-like PRR73, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27859.1.S1_at--819--7071Chr03:9729742..9729766 (25 bp)
GTCTAGTTCCACTGAAACACCTGAA
LOC_Os03g17540
Os.27859.1.S1_at--190--5291Chr03:9729764..9729788 (25 bp)
GAAGGCTAAACTCCTGTCGAATCAG
NONE
Os.27859.1.S1_at--1010--7911Chr03:9729806..9729830 (25 bp)
GGATTGGATTACCTGATCACCAGAA
NONE
Os.27859.1.S1_at--741--1531Chr03:9729846..9729870 (25 bp)
AGCATCAATGTTTTGCCCGCAGGAA
NONE
Os.27859.1.S1_at--996--6891Chr03:9729916..9729940 (25 bp)
GTATCATATCGAGCCCAGTTGTCAG
NONE
Os.27859.1.S1_at--548--6331Chr03:9729940..9729964 (25 bp)
GATGCAGCTTCCTTGTTAGGTTCGA
NONE
Os.27859.1.S1_at--111--6591Chr03:9730015..9730039 (25 bp)
GATTGTCGATAGTTAGTTCCGGATA
NONE
Os.27859.1.S1_at--342--1431Chr03:9730046..9730070 (25 bp)
AGAAAAGGCACACTACTTCCCATAC
NONE
Os.27859.1.S1_at--1006--2051Chr03:9730190..9730214 (25 bp)
ACTTGCTTTCACACGAGTGCCTTAA
NONE
Os.27859.1.S1_at--1014--8671Chr03:9730234..9730258 (25 bp)
TGTGTAAACACCGAGTCTCCACTGA
NONE
Os.27859.1.S1_at--364--7172Chr08:28013120..28013256 (24 bp)
GTCTCCACTGAGAATGCTCTTTTTT
NONE
Target Sequence 
GTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCAGGACATGATTGTTGCTAAGGATTGGATTACCTGA
TCACCAGAAAAATGCGTTCATGCAAGCATCAATGTTTTGCCCGCAGGAAGATTCAACATGAATTTCCCATGAAGTTTTGC
TGAAATTGTCATATGTATCATATCGAGCCCAGTTGTCAGATGCAGCTTCCTTGTTAGGTTCGAATTGTTGTAATGCATCC
GTGTAAATTTTCTTTTTCAATTAGTTTTATTAAGATTGTCGATAGTTAGTTCCGGATAGGAGAAAGAAAAGGCACACTAC
TTCCCATACACATTANATTAGTTTGCGACGATGTCGTGGTATTATACCGGTGAAGAGCTGTTTTTATACCTCTTCGGGAA
GAGTTGTGCAGGAGTAGTGCAAAGAAATGATGTTTTTTTATTCATGTGACTTGCTTTCACACGAGTGCCTTAAGCATATT
AATTTCATATGTTGTGTAAACACCGAGTCTCCACTGAGAATGCTCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis