Browse Element(s) Details


Os.27860.1.A1_at

Description gb:AK073172.1
DB_XREF= gi:32983195
TID=Os.27860.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0638D12.10 (P0638D12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022G13, full insert sequence.
FL= gb:AK073172.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5371011/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g53710Os.27860.1.A1_at11/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53710Os.27860.3.S1_x_at3/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53720Os.8015.1.S1_at1/111+31205940..31212133expressed protein
LOC_Os01g53730Os.1993.1.S1_at11/111+31212020..31213186expressed protein
LOC_Os01g53740OsAffx.23779.1.S1_at11/111+31216647..31217504hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27860.1.A1_at--982--6691Chr01:31198153..31198177 (25 bp)
GTTCGGGCCTGCTAGGTAAACCAGC
LOC_Os01g53710
Os.27860.1.A1_at--798--9831Chr01:31198169..31198193 (25 bp)
TAAACCAGCAGGCTTTTATGCAGTT
LOC_Os01g53710
Os.27860.1.A1_at--525--10131Chr01:31198185..31198209 (25 bp)
TATGCAGTTTTCAATGCTGTGAATC
LOC_Os01g53710
Os.27860.1.A1_at--666--3191Chr01:31198196..31198220 (25 bp)
CAATGCTGTGAATCAAGGGTACATA
LOC_Os01g53710
Os.27860.1.A1_at--677--1211Chr01:31198240..31198264 (25 bp)
AGTTAGCCTGTTAGACATGGTAGAA
LOC_Os01g53710
Os.27860.1.A1_at--318--3731Chr01:31198277..31198301 (25 bp)
CTACTTTCTCTTATCGCGGCAATGC
LOC_Os01g53710
Os.27860.1.A1_at--654--10151Chr01:31198288..31198312 (25 bp)
TATCGCGGCAATGCCACCGGGAAGA
LOC_Os01g53710
Os.27860.1.A1_at--1114--6251Chr01:31198352..31198376 (25 bp)
GATGTGCGGATTGTCCTTGTTTTTT
LOC_Os01g53710
Os.27860.1.A1_at--682--3991Chr01:31198388..31198412 (25 bp)
CGTGAGATTTCACTTAATGGTTGTT
LOC_Os01g53710
Os.27860.1.A1_at--21--9771Chr01:31198402..31198426 (25 bp)
TAATGGTTGTTTCTCCGATCGGAAT
LOC_Os01g53710
Os.27860.1.A1_at--555--3071Chr01:31198424..31198448 (25 bp)
AATAAAAAGATGTCCATGTTCCATG
LOC_Os01g53710
Target Sequence 
GTTCGGGCCTGCTAGGTAAACCAGCAGGCTTTTATGCAGTTTTCAATGCTGTGAATCAAGGGTACATAGTAGTAGATAAT
AATAGGCAGTTAGCCTGTTAGACATGGTAGAAACAGTGATGTTTCTACTTTCTCTTATCGCGGCAATGCCACCGGGAAGA
AAATGTGTGCATAGTGAGTTTGGAGAGTGTAGAGATGTGGATGTGCGGATTGTCCTTGTTTTTTAANCCTGAAAACGTGA
GATTTCACTTAATGGTTGTTTCTCCGATCGGAATAAAAAGATGTCCATGTTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27860.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis