Browse Element(s) Details


Os.12235.1.S1_at

Description gb:AK069568.1
DB_XREF= gi:32979592
TID=Os.12235.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative mitochondrial processing peptidase alpha subuunit, mitochondrial recursor(ALPHA-MPP) (P0638D12.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023N17, full insert sequence.
FL= gb:AK073810.1 gb:AK069568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5370010/11Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53650Os.29084.1.S1_at11/111+31151537..31152517CCCH transcription factor, putative, expressed
LOC_Os01g53660Os.32787.3.S1_s_at11/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53660Os.32787.2.S1_x_at10/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53670Os.15939.1.S2_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670Os.15939.1.S1_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670OsAffx.9454.1.S1_x_at5/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53680Os.1991.1.S1_at11/111+31166981..31168639pyrophosphate-dependent phosphofructo-1-kinase, putative, expressed
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g53710Os.27860.1.A1_at11/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53710Os.27860.3.S1_x_at3/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53720Os.8015.1.S1_at1/111+31205940..31212133expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005739cellular_componentmitochondrion
GO:0005741cellular_componentmitochondrial outer membrane
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005758cellular_componentmitochondrial intermembrane space
GO:0005759cellular_componentmitochondrial matrix
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12235.1.S1_at--947--6791Chr01:31177870..31177894 (25 bp)
GTTTTTCTCAAAGTAAGCAAGCCTA
LOC_Os01g53700
Os.12235.1.S1_at--408--1171Chr01:31177859..31177883 (25 bp)
AGTAAGCAAGCCTATCGCATGGCTT
LOC_Os01g53700
Os.12235.1.S1_at--685--5691Chr01:31177828..31177852 (25 bp)
GACTTCTAAAGTTGCAGACGTGTAA
LOC_Os01g53700
Os.12235.1.S1_at--1138--1391Chr01:31177813..31177837 (25 bp)
AGACGTGTAACTCTACTGGTCCTTG
LOC_Os01g53700
Os.12235.1.S1_at--874--9811Chr01:31177806..31177830 (25 bp)
TAACTCTACTGGTCCTTGGCCCTAA
LOC_Os01g53700
Os.12235.1.S1_at--152--4551Chr01:31177788..31177812 (25 bp)
GCCCTAACCGCTGGAATTCACAATA
LOC_Os01g53700
Os.12235.1.S1_at--97--9911Chr01:31177708..31177732 (25 bp)
TACTCAAACGGCGATGATGCTGACT
LOC_Os01g53700
Os.12235.1.S1_at--903--8851Chr01:31177694..31177718 (25 bp)
TGATGCTGACTGTCCTTTTTATTCT
LOC_Os01g53700
Os.12235.1.S1_at--784--8851Chr01:31177654..31177678 (25 bp)
TGATCCATAATTTTGCGTCAGGCTG
LOC_Os01g53700
Os.12235.1.S1_at--540--10711Chr01:31177642..31177666 (25 bp)
TTGCGTCAGGCTGGAACTATTTTTA
LOC_Os01g53700
Os.12235.1.S1_at--67--4331Chr01:31177489..31177513 (25 bp)
CCATTCATGGTGAGCCGTTCTTCAA
NONE
Target Sequence 
GTTTTTCTCAAAGTAAGCAAGCCTATCGCATGGCTTGCCCCCGACTTCTAAAGTTGCAGACGTGTAACTCTACTGGTCCT
TGGCCCTAACCGCTGGAATTCACAATAATAAATTGTCTAGACTTATTTTTCTTAGATATTTTAATTTTAAGCAAATAATA
GTTACTCAAACGGCGATGATGCTGACTGTCCTTTTTATTCTTTTCCTTTATTATATTGATCCATAATTTTGCGTCAGGCT
GGAACTATTTTTAGTTCCGCGGTGGTGTTGTTGTTTTTTGTTTTGTTTTTTTTTTGTCGTGCTGAGCTTAGCACAGCTGA
GCTGTTGCGTATGTGTCGTGACTTCAAGTCTATGCATGCTGAAATCGTCTTGATGATTTTTCCATTCATGGTGAGCCGTT
CTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis