Browse Element(s) Details


Os.1991.1.S1_at

Description gb:AK060632.1
DB_XREF= gi:32970650
TID=Os.1991.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pyrophosphate--fructose-6-phosphate1 phosphotransferase (OSJNBb0021A09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A11, full insert sequence.
FL= gb:AK060632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5368011/11pyrophosphate-dependent phosphofructo-1-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53640Os.1986.1.S1_at11/111+31145840..31150093retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g53650Os.29084.1.S1_at11/111+31151537..31152517CCCH transcription factor, putative, expressed
LOC_Os01g53660Os.32787.3.S1_s_at11/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53660Os.32787.2.S1_x_at10/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53670Os.15939.1.S2_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670Os.15939.1.S1_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670OsAffx.9454.1.S1_x_at5/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53680Os.1991.1.S1_at11/111+31166981..31168639pyrophosphate-dependent phosphofructo-1-kinase, putative, expressed
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1991.1.S1_at--352--8611Chr01:31167210..31167234 (25 bp)
TGGTGAGAAATAGCATGCCTTTGAT
LOC_Os01g53680
Os.1991.1.S1_at--129--4991Chr01:31167198..31167222 (25 bp)
GCATGCCTTTGATGATTCTTTACCT
LOC_Os01g53680
Os.1991.1.S1_at--409--10011Chr01:31167167..31167191 (25 bp)
TAGCTACGCTATTCGGCTGAGGCCA
LOC_Os01g53680
Os.1991.1.S1_at--160--8991Chr01:31167142..31167166 (25 bp)
TGAACCGATCCTACTCAATTTTTGT
LOC_Os01g53680
Os.1991.1.S1_at--140--3191Chr01:31167127..31167151 (25 bp)
CAATTTTTGTTTTCGCGGTTCATCT
LOC_Os01g53680
Os.1991.1.S1_at--1030--10531Chr01:31167109..31167133 (25 bp)
TTCATCTCCGATGCGTTGCAATGGA
LOC_Os01g53680
Os.1991.1.S1_at--671--2911Chr01:31167074..31167098 (25 bp)
AAGGATCTTGATCGTCTACGTAATA
LOC_Os01g53680
Os.1991.1.S1_at--438--2411Chr01:31167048..31167072 (25 bp)
AAAACACCACCTCATATTTTTGTAT
LOC_Os01g53680
Os.1991.1.S1_at--754--7471Chr01:31167013..31167037 (25 bp)
GTGTGTAGCACTACGCACTTTGCAA
LOC_Os01g53680
Os.1991.1.S1_at--769--3851Chr01:31167000..31167024 (25 bp)
CGCACTTTGCAAGAGTTCTGCCTAT
LOC_Os01g53680
Os.1991.1.S1_at--1066--1331Chr01:31166989..31167013 (25 bp)
AGAGTTCTGCCTATTATTTCGGTAA
LOC_Os01g53680
Target Sequence 
TGGTGAGAAATAGCATGCCTTTGATGATTCTTTACCTGTACANGTAGCTACGCTATTCGGCTGAGGCCATGAACCGATCC
TACTCAATTTTTGTTTTCGCGGTTCATCTCCGATGCGTTGCAATGGATACACGCGAAAAGGATCTTGATCGTCTACGTAA
TAAAAAACACCACCTCATATTTTTGTATCAGAGAACATGTGTGTAGCACTACGCACTTTGCAAGAGTTCTGCCTATTATT
TCGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis