Browse Element(s) Details


OsAffx.9454.1.S1_x_at

Description gb:NM_191132.1
DB_XREF= gi:34909347
GEN=OSJNBb0021A09.20
TID=OsAffx.9454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0021A09.20 (OSJNBb0021A09.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g536705/11ENTH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53640Os.1986.1.S1_at11/111+31145840..31150093retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g53650Os.29084.1.S1_at11/111+31151537..31152517CCCH transcription factor, putative, expressed
LOC_Os01g53660Os.32787.3.S1_s_at11/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53660Os.32787.2.S1_x_at10/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53670Os.15939.1.S2_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670Os.15939.1.S1_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670OsAffx.9454.1.S1_x_at5/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53680Os.1991.1.S1_at11/111+31166981..31168639pyrophosphate-dependent phosphofructo-1-kinase, putative, expressed
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9454.1.S1_x_at--709--9771Chr01:31160011..31160035 (25 bp)
TAAGGTGCTCAAGGTGCCGGAAATC
LOC_Os01g53670
OsAffx.9454.1.S1_x_at--1132--4391Chr01:31160026..31160046 (21 bp)
GCCGGAAATCGAGCAGAAGGTTCTT
LOC_Os01g53670
OsAffx.9454.1.S1_x_at--1069--2891Chr01:31160168..31160191 (24 bp)
AAGGTTCTTGATGCCACCAGCGACG
LOC_Os01g53670
OsAffx.9454.1.S1_x_at--949--4211Chr01:31160203..31160227 (25 bp)
CCGCATGGTTCCGATTTGGCAGATA
LOC_Os01g53670
OsAffx.9454.1.S1_x_at--1113--8251Chr01:31160220..31160244 (25 bp)
GGCAGATATCGCCAGGGCCACCAAG
LOC_Os01g53670
OsAffx.9454.1.S1_x_at--53--2771NONE
AAGAGCTACACGCTTCCGCTTCGAT
NONE
OsAffx.9454.1.S1_x_at--538--4691Chr01:31165079..31165103 (25 bp)
GCGGACGGGTTCTCCTCGCGCTGTC
NONE
OsAffx.9454.1.S1_x_at--937--2891Chr01:31165147..31165168 (22 bp)
AAGGTAGTCATCACGGCGTGGGCCT
NONE
OsAffx.9454.1.S1_x_at--1110--9591Chr01:31165154..31165349 (25 bp)
TCATCACGGCGTGGGCCTTGATCAG
NONE
OsAffx.9454.1.S1_x_at--646--8831Chr01:31165343..31165367 (25 bp)
TGATCAGGCTGGTCGCTGGCGACCT
NONE
OsAffx.9454.1.S1_x_at--208--8611Chr01:31165352..31165376 (25 bp)
TGGTCGCTGGCGACCTGATCGAGCA
NONE
Target Sequence 
TAAGGTGCTCAAGGTGCCGGAAATCGAGCAGAAGGTTCTTGATGCCACCAGCGACGAGCCGTGGGGGCCGCATGGTTCCG
ATTTGGCAGATATCGCCAGGGCCACCAAGAGCTACACGCTTCCGCTTCGATCCGCCACGCTCCCGGTGAGCGAGCGCGCG
TGCCGTGCCGGCGGACGGGTTCTCCTCGCGCTGTCGCGCAGCCGCTTCGCCGGAGTAGGAGGAGGTGGTGGGGACGGGAA
GGTAGTCATCACGGCGTGGGCCTTGATCAGGCTGGTCGCTGGCGACCTGATCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9454.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis