Browse Element(s) Details


Os.29084.1.S1_at

Description gb:AK110661.1
DB_XREF= gi:32995870
TID=Os.29084.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0021A09.18 (OSJNBb0021A09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-F02, full insert sequence.
FL= gb:AK110661.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5365011/11CCCH transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53640Os.1986.1.S1_at11/111+31145840..31150093retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g53650Os.29084.1.S1_at11/111+31151537..31152517CCCH transcription factor, putative, expressed
LOC_Os01g53660Os.32787.3.S1_s_at11/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53660Os.32787.2.S1_x_at10/111+31155551..31158865calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g53670Os.15939.1.S2_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670Os.15939.1.S1_at11/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53670OsAffx.9454.1.S1_x_at5/111+31159644..31163582ENTH domain containing protein, expressed
LOC_Os01g53680Os.1991.1.S1_at11/111+31166981..31168639pyrophosphate-dependent phosphofructo-1-kinase, putative, expressed
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29084.1.S1_at--990--4111Chr01:31151920..31151944 (25 bp)
CGCACGGGACCTTCGAGACGTGGCT
LOC_Os01g53650
Os.29084.1.S1_at--892--4031Chr01:31152085..31152109 (25 bp)
CGTTCACGACGTCGGAGGACTCACC
LOC_Os01g53650
Os.29084.1.S1_at--1026--9291Chr01:31152110..31152134 (25 bp)
TCCGCCGTCTCCGATGGACATGAAG
LOC_Os01g53650
Os.29084.1.S1_at--520--8991Chr01:31152130..31152154 (25 bp)
TGAAGCAGATTGTCCTTGCAATGCA
LOC_Os01g53650
Os.29084.1.S1_at--724--6371Chr01:31152181..31152205 (25 bp)
GATCGGTCGCTCCAAAAACGGACAT
LOC_Os01g53650
Os.29084.1.S1_at--654--2531Chr01:31152238..31152262 (25 bp)
AACTGGGATGGGTGTCTGACCTGTT
LOC_Os01g53650
Os.29084.1.S1_at--550--5831Chr01:31152255..31152279 (25 bp)
GACCTGTTGATGTGAAACTTGCATT
LOC_Os01g53650
Os.29084.1.S1_at--290--10191Chr01:31152367..31152391 (25 bp)
TATAGGCTTGGTCCTCGTGTAAGAG
LOC_Os01g53650
Os.29084.1.S1_at--507--6951Chr01:31152403..31152427 (25 bp)
GTAGACTTTTTATTCGAAATCTGTG
LOC_Os01g53650
Os.29084.1.S1_at--22--491Chr01:31152421..31152445 (25 bp)
ATCTGTGTATCTTTGTGCCTATATA
LOC_Os01g53650
Os.29084.1.S1_at--195--5931Chr01:31152461..31152485 (25 bp)
GAGCTTCGTATGTATCTCCAATTGA
LOC_Os01g53650
Target Sequence 
CGCACGGGACCTTCGAGACGTGGCTGCACCCGTCGCGCTACCGCACGCGGCCGTGCCGCTCCGGCATGCTGTGCGCTCGC
CCGGTATGCTTCTTCGCCCACAACGACAAGGAGCTGCGGATCGTGGGCGACGACGCTGCCGCCGCCACGCCCTCGCCGAG
GTCCCCGTTCACGACGTCGGAGGACTCACCTCCGCCGTCTCCGATGGACATGAAGCAGATTGTCCTTGCAATGCAACAGA
TGGATGCGAGGAAGGCGACGCGATCGGTCGCTCCAAAAACGGACATGTTACAGCAGGAGCTGGAAGAGGACGCTCCGGAA
CTGGGATGGGTGTCTGACCTGTTGATGTGAAACTTGCATTTTGAGATGTACAAATTATTTATATAATTTATTTTCAACAG
AAATGTATTCTGTATTCTATATTCTGTAACGTAATTTCAAGTATATATATAGGCTTGGTCCTCGTGTAAGAGAACTACAT
GATGTAGACTTTTTATTCGAAATCTGTGTATCTTTGTGCCTATATATTTTCGCTCAAGTAAGAGCTTCGTATGTATCTCC
AATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis