Browse Element(s) Details


Os.27860.3.S1_x_at

Description gb:NM_191136.1
DB_XREF= gi:34909355
GEN=P0638D12.10
TID=Os.27860.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0638D12.10 (P0638D12.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0638D12.10 (P0638D12.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g537103/11Dual specificity phosphatase, catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53690OsAffx.2324.1.S1_at11/111+31173765..31174342hypothetical protein
LOC_Os01g53700Os.12235.1.S1_at10/111+31177491..31183075Mitochondrial processing peptidase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os01g53710Os.27860.1.A1_at11/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53710Os.27860.3.S1_x_at3/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53720Os.8015.1.S1_at1/111+31205940..31212133expressed protein
LOC_Os01g53730Os.1993.1.S1_at11/111+31212020..31213186expressed protein
LOC_Os01g53740OsAffx.23779.1.S1_at11/111+31216647..31217504hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27860.3.S1_x_at--1133--5851Chr01:31197951..31197975 (25 bp)
GAGCCCTACAGTGTGTACTGACGCA
LOC_Os01g53710
Os.27860.3.S1_x_at--1158--2851Chr01:31198049..31198073 (25 bp)
AAGTGATAGTCAGCCGGAAGCCCAT
LOC_Os01g53710
Os.27860.3.S1_x_at--991--5691Chr01:31198082..31198106 (25 bp)
GACTATCATGTCTCTTTGGATCTCT
LOC_Os01g53710
Os.27860.3.S1_x_at--384--7611Chr01:31198495..31198519 (25 bp)
GGGCAATGTTCCCTGCTATTTGGCA
NONE
Os.27860.3.S1_x_at--158--231Chr01:31198512..31198536 (25 bp)
ATTTGGCACATCACAGTCTTGGCAC
NONE
Os.27860.3.S1_x_at--113--2071Chr01:31198535..31198559 (25 bp)
ACTTGTCAAAGTCTTGCGCCTGTGC
NONE
Os.27860.3.S1_x_at--130--4811NONE
GCTCTCCGGAAGCACCTTAGAAATC
NONE
Os.27860.3.S1_x_at--462--8831Chr01:31199221..31199245 (25 bp)
TGATTCAATTATCCGTCAACGTCAT
NONE
Os.27860.3.S1_x_at--557--2151Chr01:31199251..31199275 (25 bp)
ACAGCAGAACCAAATCACGGATCAA
NONE
Os.27860.3.S1_x_at--1101--1911Chr01:31199267..31199291 (25 bp)
ACGGATCAAAATTCTTCTGCCATAT
NONE
Os.27860.3.S1_x_at--988--971Chr01:31199312..31199336 (25 bp)
AGGAGAACCAAACTGACTCACCGCC
NONE
Target Sequence 
GAGCCCTACAGTGTGTACTGACGCAGTACTCATAACAGAAGCGGACCTCGAGGGATATGATACTTATGCCGATACCAGGA
AGGACGTTGTGTCGTTGGAAGTGATAGTCAGCCGGAAGCCCATCATGAGAAGACTATCATGTCTCTTTGGATCTCTGAAA
CTTACCAACAATTGTGAGCCAACCCCAAGCCGGTTTGCTGAGGGGGGCAATGTTCCCTGCTATTTGGCACATCACAGTCT
TGGCACTTGTCAAAGTCTTGCGCCTGTGCTTCCGAGGACGACTGCTCTCCGGAAGCACCTTAGAAATCAAGAAGAGGAAA
TTTACATTGATTCAATTATCCGTCAACGTCATCAACAACAGCAGAACCAAATCACGGATCAAAATTCTTCTGCCATATTA
GACATTCAACAAAATAACAGGAGAACCAAACTGACTCACCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27860.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis