Browse Element(s) Details


Os.27893.1.S1_at

Description gb:AK072409.1
DB_XREF= gi:32982432
TID=Os.27893.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) kiaa0078 protein (P0674H09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083F05, full insert sequence.
FL= gb:AY318757.1 gb:AK072812.1 gb:AY288943.1 gb:AK060771.1 gb:AK099099.1 gb:AK072409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6725011/11N terminus of Rad21/Rec8 like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g67229NANA1+39338346..39338807NA
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007062biological_processsister chromatid cohesion
GO:0007067biological_processmitosis
GO:0010032biological_processmeiotic chromosome condensation
GO:0000798cellular_componentnuclear cohesin complex
GO:0005634cellular_componentnucleus
GO:0008278cellular_componentcohesin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27893.1.S1_at--236--4851Chr01:39356457..39356481 (25 bp)
GCTACACCTGGCCTAATGGAAGAGA
LOC_Os01g67250
Os.27893.1.S1_at--272--5731Chr01:39356434..39356458 (25 bp)
GACTGTTCCTTCCAGAGTGCATGAA
LOC_Os01g67250
Os.27893.1.S1_at--305--671Chr01:39356414..39356438 (25 bp)
ATGAAAGTCCTGTTCTGAGTCCACA
LOC_Os01g67250
Os.27893.1.S1_at--681--631Chr01:39356339..39356363 (25 bp)
ATGCTAATGATCTTGTGGGTGCTGA
LOC_Os01g67250
Os.27893.1.S1_at--892--5991Chr01:39356316..39356340 (25 bp)
GAGACGACTGAACTTGCATTGACAA
LOC_Os01g67250
Os.27893.1.S1_at--438--3071Chr01:39356276..39356300 (25 bp)
AATCTTCTGGTGCTGTACAGGAGAT
LOC_Os01g67250
Os.27893.1.S1_at--818--7331Chr01:39356231..39356255 (25 bp)
GTGCAACTGAGGAATTGCCACCCCA
LOC_Os01g67250
Os.27893.1.S1_at--128--1571Chr01:39356078..39356102 (25 bp)
AGCTATGCGCTGATGGTCCTACTGA
LOC_Os01g67250
Os.27893.1.S1_at--288--3531Chr01:39355896..39355920 (25 bp)
CATGCACCTCATGCTATCTTAGCAA
LOC_Os01g67250
Os.27893.1.S1_at--768--10011Chr01:39355877..39355901 (25 bp)
TAGCAACTGCAGATTCCCAAGTGAA
LOC_Os01g67250
Os.27893.1.S1_at--65--6252Chr04:25951081..25951103 (22 bp)
GATATACCAAGTGACCTACCAACCT
NONE
Target Sequence 
GCTACACCTGGCCTAATGGAAGAGACTGTTCCTTCCAGAGTGCATGAAAGTCCTGTTCTGAGTCCACAGCGAAAAGCTTC
ACCATCAAGCAATGATGAAACTGCAAAGACAGCTGAAAATGCTAATGATCTTGTGGGTGCTGAGACGACTGAACTTGCAT
TGACAAAGCCTGTGCAAATTGAATCTTCTGGTGCTGTACAGGAGATTGATTCCTTGAGTCAACAATGTGCAACTGAGGAA
TTGCCACCCCAAGCTGAAACCTCAAACTTGGAAGCTACCATGGACAAGTCAATGATAAATACTGATGGTGTAGCTGCATC
AGGTGAAGCTACAGCTGCTAAAGAAACCACTGAAGTGTCATTGGTTGAAAATTCTTTAGAGCTATGCGCTGATGGTCCTA
CTGAACCTGTGATTGAGAACCAAACACAGTTTAATGATGGATCAGTTGATGTGCAAGGGGGCGGTCAGCATGCACCTCAT
GCTATCTTAGCAACTGCAGATTCCCAAGTGAATGTAGAAGCATCAACACAAGAAATGGCATCTAACGATATACCAAGTGA
CCTACCAACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27893.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis