Browse Element(s) Details


Os.27893.3.S1_x_at

Description gb:AF140489.1
DB_XREF= gi:4768977
TID=Os.27893.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) kiaa0078 protein (P0674H09.22), mRNA
DEF=Oryza sativa kiaa0078 protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6725010/11N terminus of Rad21/Rec8 like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g67229NANA1+39338346..39338807NA
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007062biological_processsister chromatid cohesion
GO:0007067biological_processmitosis
GO:0010032biological_processmeiotic chromosome condensation
GO:0000798cellular_componentnuclear cohesin complex
GO:0005634cellular_componentnucleus
GO:0008278cellular_componentcohesin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27893.3.S1_x_at--750--8091Chr01:39361402..39361426 (25 bp)
GGACCATATGGATCGCGGCGCATTT
LOC_Os01g67250
Os.27893.3.S1_x_at--552--6511NONE
GATATCGGCGTCTCCGTAGATTCAA
NONE
Os.27893.3.S1_x_at--144--10231Chr01:39358354..39358378 (25 bp)
TATTCCCTGAAGTTCCGATTGCACT
LOC_Os01g67250
Os.27893.3.S1_x_at--484--1691Chr01:39358319..39358343 (25 bp)
AGCCATCTTATGCTTGGTGTGGTCA
LOC_Os01g67250
Os.27893.3.S1_x_at--1099--7471Chr01:39358303..39358327 (25 bp)
GTGTGGTCAGGATCTATTCTCGCAA
LOC_Os01g67250
Os.27893.3.S1_x_at--1105--7751Chr01:39358278..39358302 (25 bp)
GGTGAACTACCTATTCCATGATTGC
LOC_Os01g67250
Os.27893.3.S1_x_at--445--2651Chr01:39358228..39358252 (25 bp)
AAGCCTTTAGGTCTACTGCCGTTGA
LOC_Os01g67250
Os.27893.3.S1_x_at--50--3091Chr01:39358189..39358213 (25 bp)
AATCAACTGCTCCTTATCATTCTAT
LOC_Os01g67250
Os.27893.3.S1_x_at--686--10251Chr01:39358133..39358157 (25 bp)
TTTGAATTACCGGAGGCTGCATTTC
LOC_Os01g67250
Os.27893.3.S1_x_at--784--6431Chr01:39357988..39358012 (25 bp)
GATCACCTTGCAAGACAACCCAGAG
LOC_Os01g67250
Os.27893.3.S1_x_at--1009--6471Chr01:39357956..39357980 (25 bp)
GATACTCAACATCCCAATTTGGCTT
LOC_Os01g67250
Target Sequence 
GGACCATATGGATCGCGGCGCATTTGGAGCGGAAGCTGCGGAAGAATCAGGTCGCGGATACGGATATCGGCGTCTCCGTA
GATTCAATTATATTCCCTGAAGTTCCGATTGCACTTCGATTATCAAGCCATCTTATGCTTGGTGTGGTCAGGATCTATTC
TCGCAAGGTGAACTACCTATTCCATGATTGCAGTGAAGCGTTGCTGAAGATAAAACAAGCCTTTAGGTCTACTGCCGTTG
ATCTTCCCCCTGAAGAATCAACTGCTCCTTATCATTCTATAACACTTCCAGAGACATTCCATCTGGATGATTTTGAATTA
CCGGAGGCTGCATTTCAGGGTGACATTGATCATCATGTAAGCACAAAAGAACAGATCACCTTGCAAGACAACCCAGAGAA
AACTGGATACTCAACATCCCAATTTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27893.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis