Browse Element(s) Details


Os.27940.1.S1_at

Description gb:AK119569.1
DB_XREF= gi:37989192
TID=Os.27940.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome p450tyr (OSJNBa0004B24.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A08, full insert sequence.
FL= gb:AK119569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3729011/11Cytochrome P450 79A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37240OsAffx.20354.1.S1_at1/113+20593339..20596268retrotransposon protein, putative, unclassified
LOC_Os03g37250OsAffx.13026.1.S1_at1/113+20596799..20604279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g37260Os.34805.1.S1_at11/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37260Os.34805.2.S1_x_at7/113+20604883..20607924pentatricopeptide, putative, expressed
LOC_Os03g37270Os.2708.3.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.1.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_at11/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37270Os.2708.2.S1_x_at10/113+20609574..20615802RNA recognition motif family protein, expressed
LOC_Os03g37290Os.27940.1.S1_at11/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37290Os.50043.1.A1_at1/113+20620699..20625453Cytochrome P450 79A1, putative, expressed
LOC_Os03g37320Os.54496.1.S1_x_at1/113+20632534..20643021expressed protein
LOC_Os03g37330Os.20977.1.S1_at11/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37330Os.20977.2.S1_x_at10/113+20645314..20647156KOW motif family protein, expressed
LOC_Os03g37340NANA3+20649706..20650735hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006569biological_processtryptophan catabolism
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0010120biological_processcamalexin biosynthesis
GO:0019761biological_processglucosinolate biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016709molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD or NADH as one donor, and incorporation of one atom of oxygen
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27940.1.S1_at--943--5891Chr03:20621067..20621091 (25 bp)
GAGCTGCGGTTCGTGTCGTTCAGCA
LOC_Os03g37290
Os.27940.1.S1_at--813--10611Chr03:20621058..20621082 (25 bp)
TTCGTGTCGTTCAGCACCGGGAGGC
LOC_Os03g37290
Os.27940.1.S1_at--631--7711Chr03:20621021..20621045 (25 bp)
GGGTGTCGCTGGGTACCCTGATCAC
LOC_Os03g37290
Os.27940.1.S1_at--107--5811Chr03:20620993..20621017 (25 bp)
GACGCTGTTCGCGAGGCTCCTGCAG
LOC_Os03g37290
Os.27940.1.S1_at--466--3951Chr03:20620840..20620864 (25 bp)
CGGCAAGTAGTTTTGCGCGCGATTA
LOC_Os03g37290
Os.27940.1.S1_at--939--10371Chr03:20620830..20620854 (25 bp)
TTTTGCGCGCGATTAGGTGTGAAAT
LOC_Os03g37290
Os.27940.1.S1_at--368--1571Chr03:20620792..20620816 (25 bp)
AGCTAGCGAGCGGAGCAGTACGTTA
LOC_Os03g37290
Os.27940.1.S1_at--762--8071Chr03:20620781..20620805 (25 bp)
GGAGCAGTACGTTAGCAGCTGTGTA
LOC_Os03g37290
Os.27940.1.S1_at--616--7431Chr03:20620761..20620785 (25 bp)
GTGTAGTGTATGTACCGGCCAGCAT
LOC_Os03g37290
Os.27940.1.S1_at--223--6991Chr03:20620750..20620774 (25 bp)
GTACCGGCCAGCATGCAGCAATAAA
LOC_Os03g37290
Os.27940.1.S1_at--749--5171Chr03:20620733..20620757 (25 bp)
GCAATAAACTGTTCATCGATCGTAC
LOC_Os03g37290
Target Sequence 
GAGCTGCGGTTCGTGTCGTTCAGCACCGGGAGGCGGGGGTGCCCCGGGGTGTCGCTGGGTACCCTGATCACCGTGACGCT
GTTCGCGAGGCTCCTGCAGGGGTTCGAGTGGAGCAAGCCGGCCGGCGTGGAGAGGGTTGAGCTGCGGGAGGAGGCGGCGA
GCCTGGTGTTGGCTCAGCCGCTGGTTTTGCAGGCGACGCCGCGGTTGGCTGCTCACCTCTACGGCGCCGGCAAGTAGTTT
TGCGCGCGATTAGGTGTGAAATAAGTGATGGTGGCAGCTAGCGAGCGGAGCAGTACGTTAGCAGCTGTGTAGTGTATGTA
CCGGCCAGCATGCAGCAATAAACTGTTCATCGATCGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis