Browse Element(s) Details


Os.27942.1.A1_at

Description gb:CF316434
DB_XREF= gi:33688195
DB_XREF=HD--05-L14.g1
CLONE=HD--05-L14
TID=Os.27942.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative zinc finger protein (P0519D04.33), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4947010/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49420Os.46500.2.S1_at8/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49420Os.46500.1.S1_at5/111+28749870..28752013transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49430OsAffx.23726.1.S1_x_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49430OsAffx.23726.2.S1_at11/111+28752662..28754409Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os01g49440Os.28686.1.S1_at11/111+28758782..28760252expressed protein
LOC_Os01g49450NANA1+28768407..28769051hypothetical protein
LOC_Os01g49460OsAffx.11530.1.S1_at5/111+28771340..28771795hypothetical protein
LOC_Os01g49470Os.27942.1.A1_at10/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49470OsAffx.27359.1.S1_x_at1/111+28774735..28785594CHY zinc finger family protein, expressed
LOC_Os01g49480OsAffx.23727.1.S1_x_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.23727.1.S1_at11/111+28790950..28791281hypothetical protein
LOC_Os01g49480OsAffx.9277.1.S1_x_at3/111+28790950..28791281hypothetical protein
LOC_Os01g49490Os.46002.1.S1_at11/111+28794537..28798019expressed protein
LOC_Os01g49490OsAffx.11531.1.S1_at10/111+28794537..28798019expressed protein
LOC_Os01g49500Os.37083.2.S1_at1/111+28803760..28804086retrotransposon protein, putative, unclassified
LOC_Os01g49510Os.15758.1.S1_a_at11/111+28806125..28809660expressed protein
LOC_Os01g49529Os.41662.1.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.1.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.41662.1.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.4.S1_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.5.S1_s_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.9943.2.S1_x_at11/111+28809781..28823023Protein kinase domain containing protein, expressed
LOC_Os01g49529Os.11986.3.S1_x_at1/111+28809781..28823023Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27942.1.A1_at--970--9711Chr01:28776543..28776567 (25 bp)
TCAAGCGCGGCAGTTAGAGCTCTTC
LOC_Os01g49470
Os.27942.1.A1_at--1066--8751Chr01:28776184..28776208 (25 bp)
TGTAGTCACTACACTTGTCCTATCT
LOC_Os01g49470
Os.27942.1.A1_at--1155--9851Chr01:28776175..28776199 (25 bp)
TACACTTGTCCTATCTGCTGCAAAT
LOC_Os01g49470
Os.27942.1.A1_at--78--4331NONE
CCTTGGGAGATATGGCGGTGTACTT
NONE
Os.27942.1.A1_at--790--9891Chr01:28775264..28775288 (25 bp)
TACTTTGGCATGTTGGACGCCTTGC
LOC_Os01g49470
Os.27942.1.A1_at--1121--1811Chr01:28775248..28775272 (25 bp)
ACGCCTTGCTGGCTGCTGAAGAGCT
LOC_Os01g49470
Os.27942.1.A1_at--301--9971Chr01:28775134..28775237 (25 bp)
TACCGTGATCGGTGTCAGGATATAC
LOC_Os01g49470
Os.27942.1.A1_at--394--6151Chr01:28775084..28775108 (25 bp)
GAGGTCTCGATTTCACTGGTTGTAC
LOC_Os01g49470
Os.27942.1.A1_at--1069--6631Chr01:28775066..28775090 (25 bp)
GTTGTACCATAAATGCGGCTCCTGT
LOC_Os01g49470
Os.27942.1.A1_at--32--611Chr01:28775054..28775078 (25 bp)
ATGCGGCTCCTGTGGTTCTTATAAT
LOC_Os01g49470
Os.27942.1.A1_at--20--2451Chr01:28774827..28774851 (25 bp)
AAAATGGACGCTACATGCACCTTCC
LOC_Os01g49470
Target Sequence 
TCAAGCGCGGCAGTTAGAGCTCTTCCCTGTGGCCATTTCATGCATTCAGCTTGCTTTCAGGCATACACTTGTAGTCACTA
CACTTGTCCTATCTGCTGCAAATCCTTGGGAGATATGGCGGTGTACTTTGGCATGTTGGACGCCTTGCTGGCTGCTGAAG
AGCTTCCTGAGGAATACCGTGATCGGTGTCAGGATATACTTTGTAATGATTGTGAAAGAAAAGGGAGGTCTCGATTTCAC
TGGTTGTACCATAAATGCGGCTCCTGTGGTTCTTATAATACCAGAGTTATCAAGACCGATACAGCAGATTGTTNTACGCC
AAACTAGTGGGGAATTATTCTTTCTTCGTTTTTGGCATATGTAAATATAGACTTACAATACATCGTGTAGTTGTGTAGCA
TAGCTACCATATTTTTCATCCCTTAGCTAGTTCATTTTTGTCAAGCCTAGCTGCAATCTACTAGGTNTAGTGTAAGCTGT
CAAAATGGACGCTACATGCACCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27942.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis