Browse Element(s) Details


Os.27951.1.S1_at

Description gb:AK112114.1
DB_XREF= gi:37988777
TID=Os.27951.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27951 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C12, full insert sequence.
FL= gb:AK112114.1 gb:AK111853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0237011/11galactosyltransferase family protein, putative, expressed
LOC_Os05g412201/11SNF1-related protein kinase regulatory beta subunit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02360Os.47354.1.A1_at11/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360OsAffx.9177.1.S1_x_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02360Os.40400.1.S1_at1/118+929664..9341323' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g02370Os.27951.1.S1_at11/118+934508..938062galactosyltransferase family protein, putative, expressed
LOC_Os08g02380Os.18328.1.S1_s_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02380OsAffx.16789.1.S1_at11/118+941334..946233Kinesin motor domain containing protein, expressed
LOC_Os08g02390Os.27914.1.S1_at11/118+947342..949799RNA recognition motif family protein, expressed
LOC_Os08g02400OsAffx.16790.1.S1_s_at11/118+950035..95232240S ribosomal protein S13, putative, expressed
LOC_Os08g02410Os.15168.1.S1_at11/118+956242..95818840S ribosomal protein S13, putative, expressed
LOC_Os08g02420Os.8701.1.S1_at11/118+962973..963903EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0004679molecular_functionAMP-activated protein kinase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27951.1.S1_at--379--2772Chr08:935804..935828 (25 bp)
AAGACGTGTCATTTGGTTCTTGGTT
LOC_Os08g02370
Os.27951.1.S1_at--799--1351Chr08:935750..935774 (25 bp)
AGAGAAGCCTTTGCTGTGGCACTCC
LOC_Os08g02370
Os.27951.1.S1_at--666--8171Chr08:934901..934925 (25 bp)
GGAACCCGTGCGCAGCGTCATTCGA
LOC_Os08g02370
Os.27951.1.S1_at--677--9571Chr08:934884..934908 (25 bp)
TCATTCGACTGGAACTGCACCGGCA
LOC_Os08g02370
Os.27951.1.S1_at--43--7131Chr08:934808..934832 (25 bp)
GTCATGTGGCCGATTTGCAGGCACA
LOC_Os08g02370
Os.27951.1.S1_at--459--811Chr08:934770..934794 (25 bp)
ATGGGTGGTAGTTCAGGCATCCTCA
LOC_Os08g02370
Os.27951.1.S1_at--365--931Chr08:934756..934780 (25 bp)
AGGCATCCTCATAGTATTGTTTTCT
LOC_Os08g02370
Os.27951.1.S1_at--368--6811Chr08:934738..934762 (25 bp)
GTTTTCTCTGAACCCAACATGTAAA
LOC_Os08g02370
Os.27951.1.S1_at--173--8571Chr08:934679..934703 (25 bp)
TGGTTAGTTTTTTCAGGTGCGCCCT
LOC_Os08g02370
Os.27951.1.S1_at--837--8651Chr08:934655..934679 (25 bp)
TGTGGTTGGCATCTTTTCCTGGCTA
LOC_Os08g02370
Os.27951.1.S1_at--1126--10291Chr08:934641..934665 (25 bp)
TTTCCTGGCTAGTTTGCAATGCATT
LOC_Os08g02370
Target Sequence 
AAGACGTGTCATTTGGTTCTTGGTTGATTGGATTGGATGTTGAGCATGTGGATGAGAGAAGCCTTTGCTGTGGCACTCCC
CCAGACTGCGAATGGAAGGCGCAGGCTGGGAACCCGTGCGCAGCGTCATTCGACTGGAACTGCACCGGCATCTGCAATCC
GGTGGAGAGGATGGAGGAGGTGCACCGGCGATGCTGGGAAGGTCATGTGGCCGATTTGCAGGCACAGTTTTGACAACCAA
TGGGTGGTAGTTCAGGCATCCTCATAGTATTGTTTTCTCTGAACCCAACATGTAAATTGCTCGGGAGAACGAAATTGTTA
TGCAATGCAGTGGTTAGTTTTTTCAGGTGCGCCCTGTGGTTGGCATCTTTTCCTGGCTAGTTTGCAATGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis