Browse Element(s) Details


Os.27958.1.S1_at

Description gb:AK064938.1
DB_XREF= gi:32974956
TID=Os.27958.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative alliinase (P0683B11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P04, full insert sequence.
FL= gb:AK064938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5201011/11Allinase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27958.1.S1_at--899--2791Chr01:30224605..30224629 (25 bp)
AAGATACCGCCCCAGTACTGCACTT
LOC_Os01g52010
Os.27958.1.S1_at--855--411Chr01:30224829..30224853 (25 bp)
ATCATCTCGCGGTCCGGCACTTTAT
LOC_Os01g52010
Os.27958.1.S1_at--145--8251Chr01:30224844..30224868 (25 bp)
GGCACTTTATCCGAGGCCGAAGCTC
LOC_Os01g52010
Os.27958.1.S1_at--407--4511Chr01:30224859..30224883 (25 bp)
GCCGAAGCTCGGTACACGCGGATGA
LOC_Os01g52010
Os.27958.1.S1_at--928--2691Chr01:30224863..30224887 (25 bp)
AAGCTCGGTACACGCGGATGAGCCT
LOC_Os01g52010
Os.27958.1.S1_at--1040--9851Chr01:30224871..30224895 (25 bp)
TACACGCGGATGAGCCTCCTCAAGG
LOC_Os01g52010
Os.27958.1.S1_at--706--691Chr01:30224880..30224904 (25 bp)
ATGAGCCTCCTCAAGGCGCAGGACG
LOC_Os01g52010
Os.27958.1.S1_at--537--5591Chr01:30224991..30225015 (25 bp)
GAAATCGTGAATTGAGAGGGTGCCA
LOC_Os01g52010
Os.27958.1.S1_at--211--10751Chr01:30225002..30225026 (25 bp)
TTGAGAGGGTGCCAAGCTTCGTCTA
LOC_Os01g52010
Os.27958.1.S1_at--251--7771Chr01:30225009..30225033 (25 bp)
GGTGCCAAGCTTCGTCTAGCTGGCT
LOC_Os01g52010
Os.27958.1.S1_at--517--751Chr01:30225194..30225218 (25 bp)
ATGTAGATATACACAAGCAATTATG
LOC_Os01g52010
Target Sequence 
AAGATACCGCCCCAGTACTGCACTTACTTCAACCGGATCAAAGAGCCATCGCCAGCCTACGCGTGGGTGAAATGCGAGTG
GGAGGAAGACGTCGACTGCTACGAGACGCTGCTGGCGGCGGGGATCATCTCGCGGTCCGGCACTTTATCCGAGGCCGAAG
CTCGGTACACGCGGATGAGCCTCCTCAAGGCGCAGGACGACTTCGACGTGCTCCTGGAGAGGATCACCGAATTCGTCGAT
GCCGAGGAGCACGGCAGAGCTCCCGGTGGCTCCAGCTCCATGTGAGAAATCGTGAATTGAGAGGGTGCCAAGCTTCGTCT
AGCTGGCTTCGATGGGCGCTGTGCCGGAACGATCAGCTCTACTATCTGATTGTTCTTGGGTAAGTTCATGGGTACAATAA
TCAAGGGGAATGATCAGCTAGACGTTGATTGTTCCCCGTCAATATTTGGACGAACAGGTAGATATTGATTTGTGTGTATT
GACGAATGATGTAGATATACACAAGCAATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis