Browse Element(s) Details


Os.27995.1.A1_at

Description gb:CB967178
DB_XREF= gi:30229287
DB_XREF=NL49_B03
CLONE=NL49_B03
TID=Os.27995.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.27995 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197398.1 (A.thaliana) plasma membrane associated protein -like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g332205/11AWPM-19-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33180NANA5+19372956..19373764hypothetical protein
LOC_Os05g33190Os.23511.1.S1_at10/115+19381990..19384745Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33200OsAffx.27135.1.S1_at11/115+19387083..19389968Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os05g33210OsAffx.27136.1.S1_at11/115+19393642..19395101Ubiquinol-cytochrome c reductase complex 8.0 kDa protein, putative
LOC_Os05g33220Os.47979.1.A1_s_at11/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.47979.1.A1_at10/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33220Os.27995.1.A1_at5/115+19397690..19399024AWPM-19-like family protein, expressed
LOC_Os05g33230Os.53333.1.S1_at11/115+19399724..19405264Cobalt transport protein, expressed
LOC_Os05g33240Os.9722.1.S1_at11/115+19405242..19407444DNA-directed RNA polymerase II 19 kDa polypeptide, putative, expressed
LOC_Os05g33260Os.27259.1.S1_at10/115+19407534..19414457expressed protein
LOC_Os05g33270Os.10474.1.S1_s_at11/115+19419990..19424042GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27995.1.A1_at--8--1091NONE
AGGGCTACCCCGCCAGCATGATGTC
NONE
Os.27995.1.A1_at--1117--4651Chr05:19398498..19398522 (25 bp)
GCGTGCAAGGAGATCAGCATCGGCT
LOC_Os05g33220
Os.27995.1.A1_at--884--6031Chr05:19398507..19398531 (25 bp)
GAGATCAGCATCGGCTGGAGGCCAC
LOC_Os05g33220
Os.27995.1.A1_at--476--8351Chr05:19398519..19398539 (21 bp)
GGCTGGAGGCCACCGAGCCTGCGAG
LOC_Os05g33220
Os.27995.1.A1_at--907--4451Chr05:19398660..19398680 (21 bp)
GCCTGCGAGCGCTGGAGACGTTCAC
LOC_Os05g33220
Os.27995.1.A1_at--662--1491NONE
AGCACACGCGGCCATTATACAGAAT
NONE
Os.27995.1.A1_at--383--4131NONE
CGCGGCCATTATACAGAATCCGATG
NONE
Os.27995.1.A1_at--569--7211NONE
GTCGACCGTGTCGAGGAGGATTTCG
NONE
Os.27995.1.A1_at--784--6111NONE
GAGGATTTCGGTGCAAAACCGTATT
NONE
Os.27995.1.A1_at--55--10851Chr05:19398843..19398879 (25 bp)
TTGGTTTGTGGCGTACGTACGTGTA
LOC_Os05g33220
Os.27995.1.A1_at--64--4051NONE
CGTTGTGGATTTATGCTAGTGTTTG
NONE
Target Sequence 
AGGGCTACCCCGCCAGCATGATGTCCGCCGCCGCCGCCTCCATCGTCACCTGGACCCTCACCCTCCTCGCCATGGGGCTG
GCGTGCAAGGAGATCAGCATCGGCTGGAGGCCACCGAGCCTGCGAGCGCTGGAGACGTTCACCATCATCTTGGCCGGGAC
GCAGCTGCTGTGCGCCGGGTCGCTGCACGCCGGAGCACACGCGGCCATTATACAGAATCCGATGGTTAGCANAGTGTGAG
GGNGTCGTCGACCGTGTCGAGGAGGATTTCGGTGCAAAACCGTATTATCAATCTTGGGCGACGGTTTGGTTTGTGGCGTA
CGTACGTGTACGCGCGTGAGGAGGAACGTTGTGGATTTATGCTAGTGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27995.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis