Browse Element(s) Details


Os.28026.1.S1_at

Description gb:AY281300.1
DB_XREF= gi:30841911
TID=Os.28026.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28026 (NCBI UniGene Cluster)
DEF=Oryza sativa putative zinc transporter OsZIP2 mRNA, complete cds.
PROD=putative zinc transporter OsZIP2
FL= gb:AK070864.1 gb:AY281300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3956011/11Zinc transporter 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39520Os.34987.1.A1_a_at11/115+23107448..23111951dehydration-responsive protein, putative, expressed
LOC_Os05g39530Os.27722.1.S1_at10/115+23112962..23118253ribonuclease P family protein, putative, expressed
LOC_Os05g39540OsAffx.15028.1.S1_at11/115+23121364..23123070ZIP zinc/iron transport family protein, expressed
LOC_Os05g39550OsAffx.27239.1.S1_at10/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.27239.2.S1_at7/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39550OsAffx.22046.3.S1_x_at1/115+23126209..23129587ZIP Zinc transporter family protein, expressed
LOC_Os05g39560Os.28026.1.S1_at11/115+23133272..23135983Zinc transporter 1 precursor, putative, expressed
LOC_Os05g39570Os.47463.1.S1_x_at6/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39570Os.14491.2.S1_x_at4/115+23141988..23145685transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g39580NANA5+23156756..23157406Streptomyces cyclase/dehydrase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006826biological_processiron ion transport
GO:0006828biological_processmanganese ion transport
GO:0006829biological_processzinc ion transport
GO:0006879biological_processiron ion homeostasis
GO:0010043biological_processresponse to zinc ion
GO:0015691biological_processcadmium ion transport
GO:0005381molecular_functioniron ion transporter activity
GO:0005384molecular_functionmanganese ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0008324molecular_functioncation transporter activity
GO:0015086molecular_functioncadmium ion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28026.1.S1_at--796--3931Chr05:23135548..23135572 (25 bp)
CGGCGTTTCAATTTGTTCGGCAGGA
LOC_Os05g39560
Os.28026.1.S1_at--856--4571Chr05:23135612..23135636 (25 bp)
GCGCTCTCGCGAAGACCTGAGAATT
LOC_Os05g39560
Os.28026.1.S1_at--513--2771Chr05:23135653..23135677 (25 bp)
AAGAGAGACCACTCCGTTGGTTGAA
LOC_Os05g39560
Os.28026.1.S1_at--264--7811Chr05:23135693..23135717 (25 bp)
GGTCTCCCGTGCACGATATGTAGAA
LOC_Os05g39560
Os.28026.1.S1_at--1046--7371Chr05:23135725..23135749 (25 bp)
GTGACCATGTTACTCTGACTTGACT
LOC_Os05g39560
Os.28026.1.S1_at--715--7211Chr05:23135768..23135792 (25 bp)
GTCGTTGCTCTCTTACTGTGCAGAA
LOC_Os05g39560
Os.28026.1.S1_at--986--2511Chr05:23135791..23135815 (25 bp)
AACTTGTAGAGTCGTGCACTTGCGC
LOC_Os05g39560
Os.28026.1.S1_at--872--3711Chr05:23135816..23135840 (25 bp)
CTACCACTGTCCTTCATCTTGGAGG
LOC_Os05g39560
Os.28026.1.S1_at--370--9471Chr05:23135867..23135891 (25 bp)
TCTGGTCTTGATGTGAATCCGTGAT
LOC_Os05g39560
Os.28026.1.S1_at--800--7031Chr05:23135936..23135960 (25 bp)
GTAAAGCTCTATCATATCCGAAGGT
LOC_Os05g39560
Os.28026.1.S1_at--50--551Chr05:23135951..23135975 (25 bp)
ATCCGAAGGTCATCACGAGTTAGTT
LOC_Os05g39560
Target Sequence 
CGGCGTTTCAATTTGTTCGGCAGGAATGGCAGNTTTTTGTTCTTAGGCGCGTCTGATNCACGCTCGCGCTCTCGCGAAGA
CCTGAGAATTCGTTCGAGGATCTCAAAAGAGAGACCACTCCGTTGGTTGAAACTGACGAGGAGAGGGGTCTCCCGTGCAC
GATATGTAGAACAGTTCAGTGACCATGTTACTCTGACTTGACTGACTGACCCGTNATNGTCGTCGTTGCTCTCTTACTGT
GCAGAACTTGTAGAGTCGTGCACTTGCGCCTACCACTGTCCTTCATCTTGGAGGNACAATAATGCCAGTGGTGGGCAGAA
TTCTGGTCTTGATGTGAATCCGTGATGTACGGGGTAAGACNAGGCTCGTGAATGAGTATACTCCATATCTGTAAAGCTCT
ATCATATCCGAAGGTCATCACGAGTTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis