Browse Element(s) Details


Os.28061.1.S1_at

Description gb:AK065674.1
DB_XREF= gi:32975692
TID=Os.28061.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.28061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036B10, full insert sequence.
FL= gb:AK065674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2739011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27340NANA3+15638978..15640130hypothetical protein
LOC_Os03g27350Os.25101.2.A1_s_at11/113+15640636..15644377Peptidase family C54 containing protein, expressed
LOC_Os03g27360OsAffx.13073.1.S1_at11/113+15646987..15648240Zinc finger, C3HC4 type family protein
LOC_Os03g27370Os.54571.2.A1_at11/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27370Os.50043.1.A1_at1/113+15652482..15657487Phospholipase D alpha 1, putative, expressed
LOC_Os03g27380OsAffx.13074.1.S1_at11/113+15661467..15661676expressed protein
LOC_Os03g27390Os.28061.1.S1_at11/113+15664348..15668007expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28061.1.S1_at--1077--9871Chr03:15664867..15664891 (25 bp)
TACTAGTGAATCACCGACCACTGCA
LOC_Os03g27390
Os.28061.1.S1_at--621--9191Chr03:15664828..15664852 (25 bp)
TCCACTGATGGAGAGTACTACCTAG
LOC_Os03g27390
Os.28061.1.S1_at--838--9891Chr03:15664813..15664837 (25 bp)
TACTACCTAGCAGCAAGCCGGTGTC
LOC_Os03g27390
Os.28061.1.S1_at--518--2651Chr03:15664799..15664823 (25 bp)
AAGCCGGTGTCACATCTTTCTTCTG
LOC_Os03g27390
Os.28061.1.S1_at--944--3671Chr03:15664784..15664808 (25 bp)
CTTTCTTCTGGGTCAGTTCAGTGCA
LOC_Os03g27390
Os.28061.1.S1_at--1119--1211Chr03:15664770..15664794 (25 bp)
AGTTCAGTGCAGTGCCTCTTGGTAG
LOC_Os03g27390
Os.28061.1.S1_at--220--9511Chr03:15664717..15664741 (25 bp)
TCTCATGGCGTTGATGGCGCAATAA
LOC_Os03g27390
Os.28061.1.S1_at--438--4871Chr03:15664674..15664698 (25 bp)
GCTATAAAGATCTTTTTTCTCCCCT
LOC_Os03g27390
Os.28061.1.S1_at--315--4771Chr03:15664565..15664589 (25 bp)
GCTGCATGCGTCGATGGCTTTTTGA
LOC_Os03g27390
Os.28061.1.S1_at--232--10051Chr03:15664496..15664520 (25 bp)
TAGTTCGGGCTCCTTGTGTGTGTTT
LOC_Os03g27390
Os.28061.1.S1_at--1094--10111Chr03:15664386..15664410 (25 bp)
TATGCTACTGTATACTGTACTCCTA
LOC_Os03g27390
Target Sequence 
TACTAGTGAATCACCGACCACTGCACCTTCATCCATCCATCCACTGATGGAGAGTACTACCTAGCAGCAAGCCGGTGTCA
CATCTTTCTTCTGGGTCAGTTCAGTGCAGTGCCTCTTGGTAGGCACCTCCTCCCTCTCATAAAAAAAGGCTCTCATGGCG
TTGATGGCGCAATAAGTAAAACAGGGAGGNCTAAGCTATAAAGATCTTTTTTCTCCCCTCCNATTGTGGTGTGATCCAAA
GCAAAGGAAGGAAGGAGGAATGAATGAATGAAGTCCATGCAAAGTGCAGTGCTGGTGGCCTGGTGCTGCATGCGTCGATG
GCTTTTTGACCCCCAAAGGTTGAGAGATGAGATGGCGGGGCCGCGCCCGAGGTTAGTTCGGGCTCCTTGTGTGTGTTTGT
ATGGTGGCGTGTGTAGCTAGCAGAGTGTGCGTGATGGCGTCGTCCCTCGCGCTTTTTNTGCCTTTCTACTAGTACTATAC
ATATATGCTACTGTATACTGTACTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis