Browse Element(s) Details


Os.28292.1.S1_at

Description gb:CR285098
DB_XREF= gi:44671664
DB_XREF=CR285098
CLONE=y822b09p3
TID=Os.28292.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0027P10.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4153411/11ICE-like protease p20 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41480Os.46823.1.S1_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41480Os.46823.2.S1_x_at11/1110+21960256..21963877Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os10g41490Os.3401.1.S1_at11/1110+21965068..21967958Serine/threonine-protein kinase SAPK3, putative, expressed
LOC_Os10g41510Os.22461.1.S1_at11/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41510OsAffx.18720.1.S1_at3/1110+21969211..21978935Calcineurin B-like protein 9, putative, expressed
LOC_Os10g41520Os.11223.1.S1_at11/1110+21979225..21984175Casein kinase II beta-4 subunit, putative, expressed
LOC_Os10g41534Os.47036.1.S1_s_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.28292.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.50294.1.S1_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41534Os.11453.1.S1_x_at11/1110+21986320..21994138ICE-like protease p20 domain containing protein, expressed
LOC_Os10g41550Os.46618.1.S1_at11/1110+21994509..21997928Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g41560Os.46617.1.S1_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed
LOC_Os10g41560Os.31379.1.S1_s_at11/1110+22003286..22010227C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006917biological_processinduction of apoptosis
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0030693molecular_functioncaspase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28292.1.S1_at--505--2331Chr10:21993529..21993553 (25 bp)
AAAGATCACTTCAACTGGCGCTATG
LOC_Os10g41534
Os.28292.1.S1_at--907--4571Chr10:21993546..21993570 (25 bp)
GCGCTATGACATTTTGCTTTATCCA
LOC_Os10g41534
Os.28292.1.S1_at--1146--8231Chr10:21993590..21993614 (25 bp)
GGCACCACCTATGGGAGTATCCTGA
LOC_Os10g41534
Os.28292.1.S1_at--900--7731Chr10:21993665..21993689 (25 bp)
GGTGGTGCTGTAACATCGCTAATCA
LOC_Os10g41534
Os.28292.1.S1_at--973--4831Chr10:21993682..21993706 (25 bp)
GCTAATCACAATGCTTCTTACAGGA
LOC_Os10g41534
Os.28292.1.S1_at--675--4691Chr10:21993723..21993912 (25 bp)
GCGGCTTGAAGCAGGATCCACAGCT
LOC_Os10g41534
Os.28292.1.S1_at--178--6271Chr10:21993932..21993956 (25 bp)
GATGTGTATGCGAAGCCCTTTTCTC
LOC_Os10g41534
Os.28292.1.S1_at--1019--10371Chr10:21993950..21993974 (25 bp)
TTTTCTCTATGACACGATCCTGGTA
LOC_Os10g41534
Os.28292.1.S1_at--709--10591Chr10:21993975..21993999 (25 bp)
TTCTCCACCGCGTCTATGATTATAT
LOC_Os10g41534
Os.28292.1.S1_at--54--10531Chr10:21994034..21994058 (25 bp)
TTCACTGTTGAAAGGGCTCCATTTC
LOC_Os10g41534
Os.28292.1.S1_at--451--131Chr10:21994095..21994119 (25 bp)
ATTACATTGTTCACGCCCTTTGGAA
LOC_Os10g41534
Target Sequence 
AAAGATCACTTCAACTGGCGCTATGACATTTTGCTTTATCCAAGCAATTGAGCGTGGGCAGGGCACCACCTATGGGAGTA
TCCTGACCTCCATGCGTTCGACAATACGCAGTACAGGTGATTCAATGGGCAGCGGAGGTGGTGCTGTAACATCGCTAATC
ACAATGCTTCTTACAGGAGNCAGCGTTAGTAGTGGCGGCTTGAAGCAGGATCCACAGCTAACTGCAAACGAGCCATTCGA
TGTGTATGCGAAGCCCTTTTCTCTATGACACGATCCTGGTATTCTCCACCGCGTCTATGATTATATCACTAGTCCNCGTA
TAAATTATCATGATGTAAATTTCACTGTTGAAAGGGCTCCATTTCATAAATAGAGCTAACATGTTGCATGTATTGTTGCT
CATTACATTGTTCACGCCCTTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis