Browse Element(s) Details


Os.28300.2.S1_a_at

Description gb:CB661521
DB_XREF= gi:29665246
DB_XREF=OSJNEd04H24.r
CLONE=OSJNEd04H24
TID=Os.28300.2
CNT=330
FEA=FLmRNA
TIER=Stack
STK=37
UG=Os.28300 (NCBI UniGene Cluster)
UG_TITLE=O.sativa (Taichung Native One) hsp82 mRNA for heat shock protein 82
FL= gb:AK119663.1 gb:AK061896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3041811/11Hsp90 protein
LOC_Os09g3043811/11Heat shock protein 82, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28300.2.S1_a_at--742--3533Chr09:18537404..18537428 (25 bp)
CATCCTGTTTGTACCAAAGAGAGCG
LOC_Os09g30438
Os.28300.2.S1_a_at--247--6853Chr09:18537398..18537422 (25 bp)
GTTTGTACCAAAGAGAGCGCCATTT
LOC_Os09g30438
Os.28300.2.S1_a_at--344--1353Chr09:18537387..18537411 (25 bp)
AGAGAGCGCCATTTGACCTCTTTGA
LOC_Os09g30438
Os.28300.2.S1_a_at--593--1373Chr09:18537385..18537409 (25 bp)
AGAGCGCCATTTGACCTCTTTGACA
LOC_Os09g30438
Os.28300.2.S1_a_at--787--1753Chr09:18537372..18537396 (25 bp)
ACCTCTTTGACACCAGGAAGAAGCA
LOC_Os09g30438
Os.28300.2.S1_a_at--1057--3213Chr09:18537266..18537290 (25 bp)
CAAGGGCATTGTTGATTCTGAAGAC
LOC_Os09g30438
Os.28300.2.S1_a_at--145--8833Chr09:18537254..18537278 (25 bp)
TGATTCTGAAGACCTTCCCCTCAAC
LOC_Os09g30438
Os.28300.2.S1_a_at--1066--7053Chr09:18536980..18537004 (25 bp)
GTAACCCGGATGAAGGAGGGCCAGA
LOC_Os09g30438
Os.28300.2.S1_a_at--646--8013Chr09:18536966..18536990 (25 bp)
GGAGGGCCAGAGTGAGATCTATTAC
LOC_Os09g30438
Os.28300.2.S1_a_at--974--8433Chr09:18536962..18536986 (25 bp)
GGCCAGAGTGAGATCTATTACATCA
LOC_Os09g30438
Os.28300.2.S1_a_at--1006--1113Chr09:18536956..18536980 (25 bp)
AGTGAGATCTATTACATCACTGGTG
LOC_Os09g30438
Target Sequence 
CATCCTGTTTGTACCAAAGAGAGCGCCATTTGACCTCTTTGACACCAGGAAGAAGCAAAACAACATCAAGCTGTACGTAC
GCCGGGTGTTTATCATGGACAACTGTGAGGAGTTGATCCCAGAGTGGCTCAGCTTTGTCAAGGGCATTGTTGATTCTGAA
GACCTTCCCCTCAACATCTCACGTGAGATGCTCCAGCAGAACAAGATCCTGAAGGTGATCCGCAAGAACCTTGTGAAGAA
GTGCGTGGAGCTCTTCTTTGAGATCGCTGAGAACAAGGAAGACTACAACAAGTTCTACGAGGCTTTCTCCAAGAATCTCA
AGCTTGGCATCCATGAGGATTCCACCAACAGGACCAAGATTGCTGAGCTCCTGAGGTATCACTCCACCAAGAGTGGTGAT
GAGTTGACCAGCCTCAAGGACTACGTAACCCGGATGAAGGAGGGCCAGAGTGAGATCTATTACATCACTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28300.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis