Browse Element(s) Details


Os.28300.2.S2_s_at

Description gb:AK061896.1
DB_XREF= gi:32971914
TID=Os.28300.2
CNT=330
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.28300 (NCBI UniGene Cluster)
UG_TITLE=O.sativa (Taichung Native One) hsp82 mRNA for heat shock protein 82
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-G11, full insert sequence.
FL= gb:AK119663.1 gb:AK061896.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3041811/11Hsp90 protein
LOC_Os09g3043811/11Heat shock protein 82, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28300.2.S2_s_at--759--4292Chr09:18536196..18536220 (25 bp)
CCTCTCCTAGTTCTCTTCTCATAGC
LOC_Os09g30438
Os.28300.2.S2_s_at--1081--7132Chr09:18536112..18536136 (25 bp)
GTCTTAGCTCTTAAACAATGCGTGG
LOC_Os09g30438
Os.28300.2.S2_s_at--1045--9552Chr09:18536111..18536135 (25 bp)
TCTTAGCTCTTAAACAATGCGTGGT
LOC_Os09g30438
Os.28300.2.S2_s_at--3--10012Chr09:18536108..18536132 (25 bp)
TAGCTCTTAAACAATGCGTGGTACC
LOC_Os09g30438
Os.28300.2.S2_s_at--889--4792Chr09:18536106..18536130 (25 bp)
GCTCTTAAACAATGCGTGGTACCTT
LOC_Os09g30438
Os.28300.2.S2_s_at--59--9832Chr09:18536101..18536125 (25 bp)
TAAACAATGCGTGGTACCTTGTCAT
LOC_Os09g30438
Os.28300.2.S2_s_at--607--2452Chr09:18536099..18536123 (25 bp)
AACAATGCGTGGTACCTTGTCATAC
LOC_Os09g30438
Os.28300.2.S2_s_at--614--2232Chr09:18536098..18536122 (25 bp)
ACAATGCGTGGTACCTTGTCATACT
LOC_Os09g30438
Os.28300.2.S2_s_at--926--3192Chr09:18536097..18536121 (25 bp)
CAATGCGTGGTACCTTGTCATACTG
LOC_Os09g30438
Os.28300.2.S2_s_at--243--3032Chr09:18536096..18536120 (25 bp)
AATGCGTGGTACCTTGTCATACTGT
LOC_Os09g30438
Os.28300.2.S2_s_at--636--612Chr09:18536095..18536119 (25 bp)
ATGCGTGGTACCTTGTCATACTGTT
LOC_Os09g30438
Target Sequence 
CCTCTCCTAGTTCTCTTCTCATAGCTNTCTGACTGCTGCTGTTCGCTTTCTTTTTGGTACGTTGGATGCATCAGTTTTGT
CTTTGTCTTAGCTCTTAAACAATGCGTGGTACCTTGTCATACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28300.2.S2_s_at     

Putative homologies in rice

Putative homologies in arabidopsis