Browse Element(s) Details


Os.28346.5.S1_at

Description gb:NM_185192.1
DB_XREF= gi:34897469
TID=Os.28346.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.28346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative Zea mays retrotransposon Opie-2 (OSJNBa0009C08.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0096M04.105), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5757011/11retrotransposon protein, putative, unclassified
LOC_Os03g0168411/11retrotransposon protein, putative, unclassified
LOC_Os03g6312411/11retrotransposon protein, putative, unclassified
LOC_Os03g0167011/11E1-E2 ATPase family protein
LOC_Os03g1326011/11retrotransposon protein, putative, unclassified
LOC_Os04g5758011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57530NANA4+34012126..34014305expressed protein
LOC_Os04g57540Os.17130.1.S1_at11/114+34017343..34019799Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os04g57550Os.11407.1.S1_at11/114+34020761..34024119amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57560Os.10617.1.S1_at11/114+34025190..34029263amine oxidase, flavin-containing family protein, expressed
LOC_Os04g57570Os.28346.5.S1_at11/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.5.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.3.S1_x_at10/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.4.S1_x_at8/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_x_at5/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57570Os.28346.1.S1_at1/114+34033348..34044339retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_at11/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.5.S1_x_at10/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57580Os.28346.4.S1_x_at9/114+34045035..34046566retrotransposon protein, putative, unclassified
LOC_Os04g57590Os.9269.1.S1_at11/114+34048840..34051785intracellular protease, PfpI family protein, expressed
LOC_Os04g57600Os.12216.1.S1_at11/114+34053596..34057602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os04g57610Os.7177.2.S1_a_at10/114+34059415..34066783Auxin response factor 8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28346.5.S1_at--321--61711Chr06:2775938..2775958 (21 bp)
GAGGAGGTCTTTGCAACAGGCTTCA
NONE
Os.28346.5.S1_at--365--9911Chr06:2775938..2775959 (22 bp)
AGGAGGTCTTTGCAACAGGCTTCAC
NONE
Os.28346.5.S1_at--230--80311Chr06:2775938..2775960 (23 bp)
GGAGGTCTTTGCAACAGGCTTCACA
NONE
Os.28346.5.S1_at--335--61511Chr06:2775938..2775961 (24 bp)
GAGGTCTTTGCAACAGGCTTCACAA
NONE
Os.28346.5.S1_at--860--10111Chr06:2775938..2775962 (25 bp)
AGGTCTTTGCAACAGGCTTCACAAG
NONE
Os.28346.5.S1_at--381--78111Chr06:2775939..2775963 (25 bp)
GGTCTTTGCAACAGGCTTCACAAGG
NONE
Os.28346.5.S1_at--235--71511Chr06:2775940..2775963 (24 bp)
GTCTTTGCAACAGGCTTCACAAGGG
NONE
Os.28346.5.S1_at--321--36711Chr06:2775942..2775963 (22 bp)
CTTTGCAACAGGCTTCACAAGGGAG
NONE
Os.28346.5.S1_at--409--102711Chr06:2775943..2775963 (21 bp)
TTTGCAACAGGCTTCACAAGGGAGG
NONE
Os.28346.5.S1_at--996--107311Chr06:2775944..2776179 (25 bp)
TTGCAACAGGCTTCACAAGGGAGGC
NONE
Os.28346.5.S1_at--846--51311Chr06:2775946..2776181 (25 bp)
GCAACAGGCTTCACAAGGGAGGCCA
NONE
Target Sequence 
GAGGAGGTCTTTGCAACAGGCTTCACAAGGGAGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28346.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis