Browse Element(s) Details


Os.28649.1.S1_at

Description gb:AK111255.1
DB_XREF= gi:32996464
TID=Os.28649.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1110C07.23 (B1110C07.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-E06, full insert sequence.
FL= gb:AK111255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3746011/11Zn-finger in Ran binding protein and others containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37440OsAffx.22759.1.S1_at11/111+21246719..21249025retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g37449NANA1+21253625..21254561NA
LOC_Os01g37460Os.28649.1.S1_at11/111+21262636..21264288Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os01g37470Os.52498.1.S1_at11/111+21265187..21268127expressed protein
LOC_Os01g37480Os.23997.1.S1_at11/111+21269150..21272577expressed protein
LOC_Os01g37480Os.57362.1.S1_at2/111+21269150..21272577expressed protein
LOC_Os01g37490Os.18566.1.S1_at11/111+21277260..21278788dynein light chain, putative, expressed
LOC_Os01g37500OsAffx.23542.1.S1_at10/111+21278933..21280143hypothetical protein
LOC_Os01g37510Os.14593.1.S1_at11/111+21280808..21282357Peptide deformylase, mitochondrial precursor, putative, expressed
LOC_Os01g37520OsAffx.8983.2.S1_at11/111+21284258..21284866hypothetical protein
LOC_Os01g37530OsAffx.2177.1.S1_at11/111+21287471..21287716hypothetical protein
LOC_Os01g37530OsAffx.31891.1.S1_x_at1/111+21287471..21287716hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28649.1.S1_at--25--8391Chr01:21263188..21263207 (20 bp)
GGCGACTGGATCTGCCCCAGAATGG
LOC_Os01g37460
Os.28649.1.S1_at--91--4531Chr01:21263810..21263830 (21 bp)
GCCCCAGAATGGAATGCAACGTGCA
LOC_Os01g37460
Os.28649.1.S1_at--759--5151Chr01:21263821..21263845 (25 bp)
GCAACGTGCAGAACTACGCTAACAG
LOC_Os01g37460
Os.28649.1.S1_at--469--1831Chr01:21263836..21263860 (25 bp)
ACGCTAACAGAACCGAGTGCTTCCG
LOC_Os01g37460
Os.28649.1.S1_at--842--4911Chr01:21263854..21263878 (25 bp)
GCTTCCGGTGCAATTTCCCCAGATA
LOC_Os01g37460
Os.28649.1.S1_at--733--10651Chr01:21263868..21264004 (25 bp)
TTCCCCAGATACTACGTTGATTGAT
LOC_Os01g37460
Os.28649.1.S1_at--714--6511Chr01:21264016..21264040 (25 bp)
GATATATGCCTTGCACTGAGAAGAA
LOC_Os01g37460
Os.28649.1.S1_at--25--8151Chr01:21264079..21264103 (25 bp)
GGACAAGATTGATCGGCCACCGGTC
LOC_Os01g37460
Os.28649.1.S1_at--319--10331Chr01:21264137..21264161 (25 bp)
TTTAGAATAACCCTCGATAACCTGA
LOC_Os01g37460
Os.28649.1.S1_at--983--9211Chr01:21264172..21264196 (25 bp)
TCATTTGTAAGAGCGGTAACGGTAC
LOC_Os01g37460
Os.28649.1.S1_at--1147--2191Chr01:21264217..21264241 (25 bp)
ACAAAATTGTGGCTGATGACTGATC
LOC_Os01g37460
Target Sequence 
GGCGACTGGATCTGCCCCAGAATGGAATGCAACGTGCAGAACTACGCTAACAGAACCGAGTGCTTCCGGTGCAATTTCCC
CAGATACTACGTTGATTGATCTGACATATATGATATATGCCTTGCACTGAGAAGAAATGAAAGGGAAATAAAATTTACGA
GATCGAAGATCGACGGACAAGATTGATCGGCCACCGGTCATGCCCTTCAGGGTTTTCTTTTTTCTATTTTTTTTTAGAAT
AACCCTCGATAACCTGAGGGTTTTTTTTCATTTGTAAGAGCGGTAACGGTACTAAAAAAACACAAAAACGGCACAAAATT
GTGGCTGATGACTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis