Browse Element(s) Details


Os.28801.1.S1_at

Description gb:AK111054.1
DB_XREF= gi:32996263
TID=Os.28801.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-C11, full insert sequence.
FL= gb:AK111054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0157010/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01530Os.12284.1.S1_at3/114+354853..357900Adenylate kinase, putative, expressed
LOC_Os04g01540Os.10129.1.S1_at11/114+361312..362957expressed protein
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein
LOC_Os04g01570Os.28801.1.S1_at10/114+376759..377523pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g01580OsAffx.3695.1.S1_x_at11/114+381388..381840hypothetical protein
LOC_Os04g01590Os.25208.1.S1_at11/114+387039..391434Arginase, putative, expressed
LOC_Os04g01600Os.49487.2.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_a_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01610NANA4+401207..402922expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28801.1.S1_at--815--5931Chr04:377044..377068 (25 bp)
GAGCAACGTGCAGACCTGGGCCAGC
LOC_Os04g01570
Os.28801.1.S1_at--506--551Chr04:376877..376901 (25 bp)
ATCCGCACCACCACTTGTAATTACT
LOC_Os04g01570
Os.28801.1.S1_at--429--7071Chr04:376861..376885 (25 bp)
GTAATTACTCTAAATCACTCCCCTA
LOC_Os04g01570
Os.28801.1.S1_at--810--10451Chr04:376857..376881 (25 bp)
TTACTCTAAATCACTCCCCTACGTG
LOC_Os04g01570
Os.28801.1.S1_at--517--9931Chr04:376838..376862 (25 bp)
TACGTGCACCTCTACAATCACTTGT
LOC_Os04g01570
Os.28801.1.S1_at--315--5091Chr04:376833..376857 (25 bp)
GCACCTCTACAATCACTTGTATGTA
LOC_Os04g01570
Os.28801.1.S1_at--855--6931Chr04:376811..376835 (25 bp)
GTAGTAATAATCTCATCGCTCCTAT
LOC_Os04g01570
Os.28801.1.S1_at--679--531Chr04:376797..376821 (25 bp)
ATCGCTCCTATCCTACACGTATTAT
LOC_Os04g01570
Os.28801.1.S1_at--696--4291Chr04:376786..376810 (25 bp)
CCTACACGTATTATGGATGCTTAAT
LOC_Os04g01570
Os.28801.1.S1_at--1001--251Chr04:376760..376784 (25 bp)
ATAGTAGTAACTGCCTTGCTTCTTC
LOC_Os04g01570
Os.28801.1.S1_at--662--9791Chr04:376756..376777 (22 bp)
TAACTGCCTTGCTTCTTCCAAAAAA
NONE
Target Sequence 
GAGCAACGTGCAGACCTGGGCCAGCGCCGCGCTCACCGACGCCTCCACCTGCCTCGACTCCCTCGCCACCTACGCCGCCC
CCGGCATCGACGTCGACGCCCTCAGGAAGCGCGTCGGCGCCGTCTCCCAGGCCACCAGCAACGCCCTCGCCCTCGTCAAC
AACCTCGATCCGCACCACCACTTGTAATTACTCTAAATCACTCCCCTACGTGCACCTCTACAATCACTTGTATGTAGTAA
TAATCTCATCGCTCCTATCCTACACGTATTATGGATGCTTAATTATAGTAGTAACTGCCTTGCTTCTTCCAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis