Browse Element(s) Details


Os.28824.1.S1_at

Description gb:AK111020.1
DB_XREF= gi:32996229
TID=Os.28824.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G09, full insert sequence.
FL= gb:AK111020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g630003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed
LOC_Os01g63000Os.28824.1.S1_at3/111+36822985..36823191expressed protein
LOC_Os01g63010Os.16018.1.S1_at11/111+36823635..36825014ENOD18 protein, putative, expressed
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified
LOC_Os01g63040OsAffx.31018.3.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040OsAffx.31018.2.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040Os.50578.1.S1_x_at7/111+36844189..36848735hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28824.1.S1_at--691--5431Chr01:36823068..36823092 (25 bp)
GAACCGGCCGGTGGACTTCATGAAC
LOC_Os01g63000
Os.28824.1.S1_at--62--2111Chr01:36823091..36823115 (25 bp)
ACATGAAGACCAGCTTGGCGTCCAT
LOC_Os01g63000
Os.28824.1.S1_at--870--6691Chr01:36823155..36823179 (25 bp)
GTTCCTTGTCATCTTGGAGGCTCAT
LOC_Os01g63000
Os.28824.1.S1_at--1080--451Chr01:36823178..36823202 (25 bp)
ATCTCTACATCTGATCCGAGTGTGT
NONE
Os.28824.1.S1_at--455--10631Chr01:36823212..36823236 (25 bp)
TTCGTTTTCTTGATGACACTGCTGT
NONE
Os.28824.1.S1_at--631--6931Chr01:36823235..36823259 (25 bp)
GTAGTGCTGTGTTTTTTCTGTTCTC
NONE
Os.28824.1.S1_at--103--2531Chr01:36823274..36823298 (25 bp)
AACTTCTGGACCTGAGAGGCGCTGA
NONE
Os.28824.1.S1_at--179--6931Chr01:36823397..36823421 (25 bp)
GTATGGCTCTAGTTGACTCGTTGTT
NONE
Os.28824.1.S1_at--817--9831Chr01:36823431..36823455 (25 bp)
TAAAGCTCGGCTCATCGGATGTTCT
NONE
Os.28824.1.S1_at--1142--7091Chr01:36823571..36823595 (25 bp)
GTCACTGTGAACTCTTGTGCCACTT
NONE
Os.28824.1.S1_at--1041--291Chr01:36823612..36823636 (25 bp)
ATACCCATCCCGTGGCTTTTAATAG
NONE
Target Sequence 
GAACCGGCCGGTGGACTTCATGAACATGAAGACCAGCTTGGCGTCCATCGTGGTCCATGCCGTCATCTACGGCCTGCTGC
TCATGCTGTTCCTTGTCATCTTGGAGGCTCATCTCTACATCTGATCCGAGTGTGTTACTGTGATTTCGTTTTCTTGATGA
CACTGCTGTAGTGCTGTGTTTTTTCTGTTCTCTAGTTTCTTTAGATAACTTCTGGACCTGAGAGGCGCTGAGGACGCCTC
GAGCCCTTGATCCTTCACAGCCACAAGGCTTATGGAATACTAATAAAGAAGCAATGATGCTTTATGCTTAAACAGTTCAA
GCAGGAGTCGTATGGCTCTAGTTGACTCGTTGTTTCAATTGGCTAAAGCTCGGCTCATCGGATGTTCTTGAAATCGAAGA
GAAGAATTATGTTCCGACAGTGATTTTTTTATCAGTTTACATGCAAGAATATAGTGTTTGATTCAAGCGGGGAAGACCGA
AGATAGAACAGCATAGTGACTTTGTCACTGTGAACTCTTGTGCCACTTTGTTCTTGCTTGATTCATACCCATCCCGTGGC
TTTTAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis