Browse Element(s) Details


Os.28903.1.S1_at

Description gb:AK073549.1
DB_XREF= gi:32983572
TID=Os.28903.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aminotransferase (P0456A01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046C16, full insert sequence.
FL= gb:AK073549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5290011/11aminotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed
LOC_Os01g52910NANA1+30748903..30749235hypothetical protein
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52930NANA1+30760880..30764172retrotransposon protein, putative, unclassified
LOC_Os01g52940NANA1+30765251..30767695retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28903.1.S1_at--1003--8451Chr01:30740918..30740942 (25 bp)
TGGCCTACTACACGTCGACGCGGGA
LOC_Os01g52900
Os.28903.1.S1_at--1095--4791Chr01:30740833..30740857 (25 bp)
GCTCTACGCTTTCGACTGGGAAACC
LOC_Os01g52900
Os.28903.1.S1_at--1131--8631Chr01:30740802..30740826 (25 bp)
TGGGAGTACAACCACAGCTTCGGTC
LOC_Os01g52900
Os.28903.1.S1_at--352--9431Chr01:30740783..30740807 (25 bp)
TCGGTCGTGTCCTGGCAAACAACAA
LOC_Os01g52900
Os.28903.1.S1_at--224--9111Chr01:30740737..30740761 (25 bp)
TGCTGCTTCTAGTGGACGGGTCAAA
LOC_Os01g52900
Os.28903.1.S1_at--982--4051Chr01:30740704..30740728 (25 bp)
CGAGTACCGGAGCTACATGGCATTT
LOC_Os01g52900
Os.28903.1.S1_at--52--851Chr01:30740688..30740712 (25 bp)
ATGGCATTTGCACGGAGCCTAGCCG
LOC_Os01g52900
Os.28903.1.S1_at--797--1991Chr01:30740663..30740687 (25 bp)
ACTCCTTGGGCGGATGTCTGGATAA
LOC_Os01g52900
Os.28903.1.S1_at--737--7951Chr01:30740644..30740668 (25 bp)
GGATAACACTCCTGCTAGACACGTT
LOC_Os01g52900
Os.28903.1.S1_at--91--1091Chr01:30740615..30740639 (25 bp)
AGGGCATCGACCCACAGTTGCTTTA
LOC_Os01g52900
Os.28903.1.S1_at--997--1231Chr01:30740600..30740624 (25 bp)
AGTTGCTTTACTTCCCTATGTGAGA
LOC_Os01g52900
Target Sequence 
TGGCCTACTACACGTCGACGCGGGAGGCGGAGTTCGTGCTGGACGCCATCGACTTCGTCGCCAGTTTCGGCCACCGGTTT
CTGCCGCTCTACGCTTTCGACTGGGAAACCGGGGACTGGGAGTACAACCACAGCTTCGGTCGTGTCCTGGCAAACAACAA
CGCCATCAGCAATGCTGCCGCTGCTGCTTCTAGTGGACGGGTCAAAGCAGAGGACGAGTACCGGAGCTACATGGCATTTG
CACGGAGCCTAGCCGACTCCTTGGGCGGATGTCTGGATAACACTCCTGCTAGACACGTTCCCAAGGGCATCGACCCACAG
TTGCTTTACTTCCCTATGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis