Browse Element(s) Details


Os.942.1.S1_at

Description gb:AK068733.1
DB_XREF= gi:32978752
TID=Os.942.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456A01.17 (P0456A01.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159G20, full insert sequence.
FL= gb:AK104272.1 gb:AK068733.1 gb:AK104436.1 gb:AK098962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5286411/11integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed
LOC_Os01g52910NANA1+30748903..30749235hypothetical protein
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.942.1.S1_at--290--3651Chr01:30727781..30727805 (25 bp)
CTTAAGGTTGTTCCGCGAGGTACAG
LOC_Os01g52864
Os.942.1.S1_at--47--7851Chr01:30727826..30727850 (25 bp)
GGTACTCTAGCTGGAATTCTTGCAT
LOC_Os01g52864
Os.942.1.S1_at--1139--9571Chr01:30727858..30727882 (25 bp)
TCTTGCAAGTGTTGGTTATCTCCTG
LOC_Os01g52864
Os.942.1.S1_at--134--2951Chr01:30728087..30728111 (25 bp)
AAGGCGCAGTATGTGTCCTTGCATC
LOC_Os01g52864
Os.942.1.S1_at--186--5031Chr01:30732088..30732112 (25 bp)
GCAGTTGCTAGTAAGTTGGCGCTCT
LOC_Os01g52864
Os.942.1.S1_at--370--6611Chr01:30732102..30732126 (25 bp)
GTTGGCGCTCTTGAATACTTTTTTA
LOC_Os01g52864
Os.942.1.S1_at--932--10431Chr01:30732124..30732148 (25 bp)
TTATGACTTCTTTTGTTCAGCCTCC
LOC_Os01g52864
Os.942.1.S1_at--308--8791Chr01:30732137..30732161 (25 bp)
TGTTCAGCCTCCGTTATTATAACTT
LOC_Os01g52864
Os.942.1.S1_at--268--5191Chr01:30732187..30732211 (25 bp)
GCAATGTTCTTACATGCTGCTGCCA
LOC_Os01g52864
Os.942.1.S1_at--535--6791Chr01:30732279..30732303 (25 bp)
GTTATCTGTGTCAATCCTTCTGGTA
LOC_Os01g52864
Os.942.1.S1_at--264--4331Chr01:30732307..30732331 (25 bp)
CCATAGTTCGGTTTCTTGTACTGCT
LOC_Os01g52864
Target Sequence 
CTTAAGGTTGTTCCGCGAGGTACAGAAGGTGCGATCAGTATTGAGGGTACTCTAGCTGGAATTCTTGCATCGATAATTCT
TGCAAGTGTTGGTTATCTCCTGGGGCAGGTTAATGTATCACAAGGCGCAGTATGTGTCCTTGCATCCCAGATTGCAAATT
TTTGTGAGAGTTATATTGGTGCCNCACTACAAGATAAAGAAGGTTTTGAATGGCTCACCAATGATGTTGTCAATGTACTA
AATATCTCAACTGGTGGTATATTGGCTGTTNNGATGCAGCAGTTGCTAGTAAGTTGGCGCTCTTGAATACTTTTTTATGA
CTTCTTTTGTTCAGCCTCCGTTATTATAACTTATTATGGAGAAATGACTGGTTGATGGCAATGTTCTTACATGCTGCTGC
CATGTGAAATGGAAGTATAAATTCCGGTCTTAGAGATCATATTTGAGCGGATAAACATTTGTGGATGTAGTTATCTGTGT
CAATCCTTCTGGTATATCCATAGTTCGGTTTCTTGTACTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis