Browse Element(s) Details


OsAffx.2320.1.S1_at

Description tigr:9629.m05139
TID=OsAffx.2320.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g528647/11integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed
LOC_Os01g52910NANA1+30748903..30749235hypothetical protein
LOC_Os01g52920Os.15402.1.S1_at11/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.2.S1_at1/111+30753777..30758934expressed protein
LOC_Os01g52920Os.15402.4.S1_at1/111+30753777..30758934expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2320.1.S1_at--763--472Chr08:26299984..26300008 (25 bp)
ATCTGAAGGTGGTGCATCCTCGGGT
NONE
OsAffx.2320.1.S1_at--347--5532Chr08:26300128..26300158 (25 bp)
GAAAGACGCGGCTGTCGCCCGTCGC
NONE
OsAffx.2320.1.S1_at--954--9332Chr08:26300148..26300172 (25 bp)
TCGCCCGTCGCAAGGAAAGAGGAGA
NONE
OsAffx.2320.1.S1_at--287--4615Chr12:26531744..26531768 (25 bp)
GCGACGTGGATAGCGCGGCGATCGA
NONE
OsAffx.2320.1.S1_at--699--8372Chr01:30730894..30730918 (25 bp)
GGCGATCGAACACGTGACTCCAAAT
LOC_Os01g52864
OsAffx.2320.1.S1_at--254--3351Chr01:30730904..30730928 (25 bp)
CACGTGACTCCAAATCGTTGTGGGA
LOC_Os01g52864
OsAffx.2320.1.S1_at--389--2271Chr01:30730915..30730939 (25 bp)
AAATCGTTGTGGGAGGTTCAATTGG
LOC_Os01g52864
OsAffx.2320.1.S1_at--631--4191NONE
CCCGCAATGGTAAACTCACCAATGA
NONE
OsAffx.2320.1.S1_at--972--691Chr01:30732381..30732405 (25 bp)
ATGAGATGCGTTTTGCTCGTGCCAT
NONE
OsAffx.2320.1.S1_at--1156--7271Chr01:30732399..30732423 (25 bp)
GTGCCATCCCCAAACAATGGGACTA
NONE
OsAffx.2320.1.S1_at--853--3171Chr01:30732413..30732437 (25 bp)
CAATGGGACTAGTAGTAAGGTGCAT
NONE
Target Sequence 
ATCTGAAGGTGGTGCATCCTCGGGTCGGGGCAGCGACGCTGCGACGGAGTGGGAGAGGGGCGATGAGACAGCGGGAAGCA
GAGGATGGCGTGTTGTGGTGTGGGAGAGATCATCGCCGACGAGGAGAAGCAAGCCAGGTGGAGGGAAAGACGCGGCTGTC
GCCCGTCGCAAGGAAAGAGGAGAGAGCGAGAGAAGGAGAGGGGAAAGCGCGCGGGGCGACGTGGATAGCGCGGCGATCGA
ACACGTGACTCCAAATCGTTGTGGGAGGTTCAATTGGGGGCAGAGCACCCGCAATGGTAAACTCACCAATGATGTTGTCA
ATGTACTAAATATCTCAACTGGTGGTATATTGGCTGTTCTGATGCAGCAGTTGCTAAATGATAGAATGAGATGCGTTTTG
CTCGTGCCATCCCCAAACAATGGGACTAGTAGTAAGGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis