Browse Element(s) Details


Os.28909.1.S1_at

Description gb:AK110911.1
DB_XREF= gi:32996120
TID=Os.28909.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039G05.21 (P0039G05.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C02, full insert sequence.
FL= gb:AK110911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4546011/11Carboxylesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45410OsAffx.11478.1.S1_at9/111+26095471..26095944hypothetical protein
LOC_Os01g45420OsAffx.11479.1.S1_at11/111+26098440..26098898ubiquitin family protein, putative, expressed
LOC_Os01g45430OsAffx.2238.1.S1_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45430Os.17986.1.S1_s_at11/111+26100801..26103027hypothetical protein
LOC_Os01g45439Os.5202.1.S1_at11/111+26104446..26109149expressed protein
LOC_Os01g45439OsAffx.9248.1.S1_at4/111+26104446..26109149expressed protein
LOC_Os01g45450OsAffx.9247.1.S1_at11/111+26115550..26117836ATPase, AAA family protein, expressed
LOC_Os01g45460Os.28909.1.S1_at11/111+26119547..26124462Carboxylesterase, putative, expressed
LOC_Os01g45470Os.10486.1.S1_at5/111+26127617..26128012hypothetical protein
LOC_Os01g45480NANA1+26130479..26131332hypothetical protein
LOC_Os01g45490NANA1+26134229..26138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g45500Os.45173.1.S1_x_at1/111+26138924..26140854retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28909.1.S1_at--832--7131Chr01:26123923..26123947 (25 bp)
GTCATTGTCACGTTATTCTCCGGAA
LOC_Os01g45460
Os.28909.1.S1_at--92--3231Chr01:26123964..26123988 (25 bp)
CAAGTTCCCAGACAATAGCTCTTCT
LOC_Os01g45460
Os.28909.1.S1_at--780--151Chr01:26124021..26124045 (25 bp)
ATTATTCAATACCATCATCTGCCAG
LOC_Os01g45460
Os.28909.1.S1_at--86--431Chr01:26124034..26124058 (25 bp)
ATCATCTGCCAGGTTTCTTCTTATG
LOC_Os01g45460
Os.28909.1.S1_at--401--4451Chr01:26124058..26124082 (25 bp)
GCCTTCTGCAGATGTCCATTTAAGA
LOC_Os01g45460
Os.28909.1.S1_at--353--2291Chr01:26124104..26124128 (25 bp)
AAATGCACGCTTCACCTATACCTAT
LOC_Os01g45460
Os.28909.1.S1_at--99--10171Chr01:26124120..26124144 (25 bp)
TATACCTATCTACCCTCCATTTTTT
LOC_Os01g45460
Os.28909.1.S1_at--504--8271Chr01:26124149..26124173 (25 bp)
GGCATGACATGCAGGTGTTACTAAA
LOC_Os01g45460
Os.28909.1.S1_at--1110--9811Chr01:26124282..26124306 (25 bp)
TAACATCTCTAATGCCCCAATTCTT
LOC_Os01g45460
Os.28909.1.S1_at--1008--3531Chr01:26124320..26124344 (25 bp)
CATCCTTTTCCAGTGTTGTCTATTA
LOC_Os01g45460
Os.28909.1.S1_at--959--5311Chr01:26124374..26124398 (25 bp)
GAAGTCTTTTTACATCTTGGCTATT
LOC_Os01g45460
Target Sequence 
GTCATTGTCACGTTATTCTCCGGAAATTGTTGTCAAGCAGTCAAGTTCCCAGACAATAGCTCTTCTGCCTCCCATTGTTC
TTATGCATGGAACTGAAGATTATTCAATACCATCATCTGCCAGGTTTCTTCTTATGCCTTCTGCAGATGTCCATTTAAGA
TGACACAAGACAAACTCGAGCAAATGCACGCTTCACCTATACCTATCTACCCTCCATTTTTTTTATGGCATGACATGCAG
GTGTTACTAAAGGAAATTTTATTTACTAAGTCCAGTTTCACTTGAATTTAGGAAGCAATGCCAATCTAAGTTGAAAAAAA
GCTGGATTGATGAAGGCGTAAACCAAGATGTAGCATGCCTAACATCTCTAATGCCCCAATTCTTCCCTTATACTCTCCAT
CCTTTTCCAGTGTTGTCTATTAGAAGCTTAAATGTAGCATATCATGAATATGAAGTCTTTTTACATCTTGGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis