Browse Element(s) Details


Os.2938.1.S1_at

Description gb:AK068088.1
DB_XREF= gi:32978106
TID=Os.2938.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pollen allergen (OSJNBb0015I11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131C11, full insert sequence.
FL= gb:AK068088.1 gb:AK066611.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3964011/11Expansin-like 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39570OsAffx.30727.1.S1_at8/1110+20824528..20826500expressed protein
LOC_Os10g39590OsAffx.20160.1.S1_x_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39590OsAffx.20160.1.S1_at11/1110+20833157..20833402Nedd8-like protein RUB3 precursor, putative, expressed
LOC_Os10g39600OsAffx.30729.1.S1_at8/1110+20835581..20836950hypothetical protein
LOC_Os10g39610NANA10+20838807..20839543expressed protein
LOC_Os10g39620Os.2935.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620OsAffx.18582.1.S1_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39620Os.2935.2.S1_x_at11/1110+20839650..20844885Ubiquitin family protein, expressed
LOC_Os10g39640Os.2938.1.S1_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39640Os.2938.1.S1_x_at11/1110+20849853..20851618Expansin-like 3 precursor, putative, expressed
LOC_Os10g39660Os.47369.1.A1_at10/1110+20860285..20861389expressed protein
LOC_Os10g39670Os.2946.1.S1_at11/1110+20870084..20875005protein kinase family protein, putative, expressed
LOC_Os10g39680Os.3415.1.S1_at11/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed
LOC_Os10g39680Os.3415.1.S1_s_at10/1110+20876015..20877926Acidic 27 kDa endochitinase precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2938.1.S1_at--772--8271Chr10:20850755..20850779 (25 bp)
GGCATGGCCGCGCAGCTCAGAACAC
LOC_Os10g39640
Os.2938.1.S1_at--45--6991Chr10:20851012..20851036 (25 bp)
GTACCGTGCGAGTACGCAGCTGGTC
LOC_Os10g39640
Os.2938.1.S1_at--301--6091Chr10:20851021..20851045 (25 bp)
GAGTACGCAGCTGGTCGCAACCTGT
LOC_Os10g39640
Os.2938.1.S1_at--906--1611Chr10:20851029..20851053 (25 bp)
AGCTGGTCGCAACCTGTCGATACGC
LOC_Os10g39640
Os.2938.1.S1_at--441--5151Chr10:20851037..20851061 (25 bp)
GCAACCTGTCGATACGCGTGGAGGA
LOC_Os10g39640
Os.2938.1.S1_at--55--8552Chr10:20851055..20851079 (25 bp)
TGGAGGAGAAGAGCCGTCCGCCGCG
LOC_Os10g39640
Os.2938.1.S1_at--119--4611Chr10:20851079..20851103 (25 bp)
GCGAGCTGTCCATCAGGTTCCTCTA
LOC_Os10g39640
Os.2938.1.S1_at--836--8691Chr10:20851085..20851109 (25 bp)
TGTCCATCAGGTTCCTCTACCAGGG
LOC_Os10g39640
Os.2938.1.S1_at--217--3471Chr10:20851092..20851116 (25 bp)
CAGGTTCCTCTACCAGGGTGGCCAA
LOC_Os10g39640
Os.2938.1.S1_at--214--3311Chr10:20851235..20851256 (22 bp)
CACGGTCGGGTCGTCGAACTGGAAG
LOC_Os10g39640
Os.2938.1.S1_at--118--4531Chr10:20851310..20851334 (25 bp)
GCCGCTGCAGTTCAGGGTGGTGGTC
LOC_Os10g39640
Target Sequence 
GGCATGGCCGCGCAGCTCAGAACACGCCGCGCCGTTGACGTCGAGTACAAGAGGGTACCGTGCGAGTACGCAGCTGGTCG
CAACCTGTCGATACGCGTGGAGGAGAAGAGCCGTCCGCCGCGCGAGCTGTCCATCAGGTTCCTCTACCAGGGTGGCCAAA
CCGACATCGTCGCCGTCGACGTCGCCACGGTCGGGTCGTCGAACTGGAAGTTCATGACGCGGGACTACGGGCCGGCGTGG
AGCACGGCGCAGGCGCCGGCGGGGCCGCTGCAGTTCAGGGTGGTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis