Browse Element(s) Details


Os.29404.2.S1_x_at

Description gb:AK110291.1
DB_XREF= gi:32995500
TID=Os.29404.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0046B10.10 (P0046B10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-F12, full insert sequence.
FL= gb:AK110291.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4262011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42600OsAffx.21367.1.S1_at2/111+24556750..24557001hypothetical protein
LOC_Os01g42610OsAffx.11443.1.S1_at11/111+24561477..24565837Terpene synthase family, metal binding domain containing protein
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29404.2.S1_x_at--647--131Chr01:24569838..24569862 (25 bp)
ATTAACACATGGTCTTTGCCGCAAC
LOC_Os01g42620
Os.29404.2.S1_x_at--1121--6491Chr01:24569765..24569789 (25 bp)
GATATACGCCCTAATGTTTTGATGT
LOC_Os01g42620
Os.29404.2.S1_x_at--191--6491Chr01:24569722..24569746 (25 bp)
GATACCTCCGTAATGGAAAGCTGCA
LOC_Os01g42620
Os.29404.2.S1_x_at--624--5411Chr01:24569696..24569720 (25 bp)
GAAGCGTTCCGGTTGCATGATGAAA
LOC_Os01g42620
Os.29404.2.S1_x_at--349--7371Chr01:24569602..24569626 (25 bp)
GTGACAGTCCCATTGACGCGGAGAA
LOC_Os01g42620
Os.29404.2.S1_x_at--83--4331Chr01:24569519..24569543 (25 bp)
CCATTGTATGGCCAGTGTCAGATTA
LOC_Os01g42620
Os.29404.2.S1_x_at--415--2711Chr01:24569439..24569463 (25 bp)
AAGCATTGAGATTCAGTTACTAACA
LOC_Os01g42620
Os.29404.2.S1_x_at--38--3071Chr01:24569390..24569414 (25 bp)
AATCTCTATTTTACCATTGGCACTT
LOC_Os01g42620
Os.29404.2.S1_x_at--256--8251Chr01:24569372..24569396 (25 bp)
GGCACTTTGTGATTACTTCTGTACT
LOC_Os01g42620
Os.29404.2.S1_x_at--872--211Chr01:24569339..24569363 (25 bp)
ATTTGTGTCCAATCAATGTACATGA
LOC_Os01g42620
Os.29404.2.S1_x_at--956--731Chr01:24569324..24569348 (25 bp)
ATGTACATGATTTTCCCTTTTTGGT
LOC_Os01g42620
Target Sequence 
ATTAACACATGGTCTTTGCCGCAACGGAGATATCGATGATGCTAGAAAATTATTGGATGAAATGAATAGGTTAGATATAC
GCCCTAATGTTTTGATGTACAACATGTTGATAAACGGATACCTCCGTAATGGAAAGCTGCAAGAAGCGTTCCGGTTGCAT
GATGAAATGCTTGAAAGGAAAATTATGCCAGATGATACAACATATGACATACTAGTTGGCATGAAATCTTTGGGAAGTGA
CAGTCCCATTGACGCGGAGAATCCTAATTTAAGTTCCACAGGATAAGGATCAAGAGCTGGCTTGAGAAGATTAAACTTTC
CATTGTATGGCCAGTGTCAGATTATGAGTTTTGCTATATATAAAGTGAAATCTTAGCTATGGCAAATAGAAGCAAAGGTA
AGCATTGAGATTCAGTTACTAACAAGAATTCACCTTTTATTATTATGTAATCTCTATTTTACCATTGGCACTTTGTGATT
ACTTCTGTACTATACATTAATTTGTGTCCAATCAATGTACATGATTTTCCCTTTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29404.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis