Browse Element(s) Details


Os.29772.1.S1_at

Description gb:AK106733.1
DB_XREF= gi:32991942
TID=Os.29772.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29772 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1523_A02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-H12, full insert sequence.
FL= gb:AK106733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4025010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40194OsAffx.13260.2.S1_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194OsAffx.13260.1.S1_s_at11/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.10592.1.S1_at7/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40194Os.8905.1.S1_at2/113+22295982..22305019DSBA-like thioredoxin domain containing protein, expressed
LOC_Os03g40210OsAffx.25447.1.S1_at10/113+22307265..22309410hypothetical protein
LOC_Os03g40220OsAffx.10237.1.S1_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40220OsAffx.16318.1.S1_x_at1/113+22312331..22314326transposon protein, putative, unclassified
LOC_Os03g40230OsAffx.25448.1.S1_at11/113+22315656..22316323hypothetical protein
LOC_Os03g40240NANA3+22320341..22321433hypothetical protein
LOC_Os03g40250Os.29772.3.S1_x_at11/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40250Os.29772.1.S1_at10/113+22323928..22325844Leucine Rich Repeat family protein, expressed
LOC_Os03g40260Os.52337.1.S1_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40260OsAffx.22679.1.S1_x_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40270Os.5039.1.S1_at11/113+22335957..22338542Alpha-1,4-glucan-protein synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29772.1.S1_at--301--8371Chr03:22324060..22324084 (25 bp)
GGCGATCGAAACTGAGCAAGCTTTC
LOC_Os03g40250
Os.29772.1.S1_at--762--5951Chr03:22324047..22324071 (25 bp)
GAGCAAGCTTTCAAAATGCGACCAT
LOC_Os03g40250
Os.29772.1.S1_at--429--10511Chr03:22324038..22324062 (25 bp)
TTCAAAATGCGACCATCGGCCTTAT
LOC_Os03g40250
Os.29772.1.S1_at--98--2291Chr03:22324034..22324058 (25 bp)
AAATGCGACCATCGGCCTTATCGAG
LOC_Os03g40250
Os.29772.1.S1_at--336--4611Chr03:22324030..22324054 (25 bp)
GCGACCATCGGCCTTATCGAGAAAT
LOC_Os03g40250
Os.29772.1.S1_at--825--9451Chr03:22324023..22324047 (25 bp)
TCGGCCTTATCGAGAAATCCATTCG
LOC_Os03g40250
Os.29772.1.S1_at--826--5971Chr03:22324012..22324036 (25 bp)
GAGAAATCCATTCGATTAGGAACTA
LOC_Os03g40250
Os.29772.1.S1_at--361--4311Chr03:22324005..22324029 (25 bp)
CCATTCGATTAGGAACTATTTACGG
LOC_Os03g40250
Os.29772.1.S1_at--1067--5471Chr03:22323993..22324017 (25 bp)
GAACTATTTACGGATTGTTTGGCAA
LOC_Os03g40250
Os.29772.1.S1_at--302--10471Chr03:22323986..22324010 (25 bp)
TTACGGATTGTTTGGCAAGAGGAGT
LOC_Os03g40250
Os.29772.1.S1_at--993--2571NONE
AAGTTTGGACGGGAAAATTGATGAT
NONE
Target Sequence 
GGCGATCGAAACTGAGCAAGCTTTCAAAATGCGACCATCGGCCTTATCGAGAAATCCATTCGATTAGGAACTATTTACGG
ATTGTTTGGCAAGAGGAGTGAAAGTTTGGACGGGAAAATTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis