Browse Element(s) Details


Os.29834.2.S1_at

Description gb:AK060725.1
DB_XREF= gi:32970743
TID=Os.29834.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.29834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.23 (B1088C09.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-G10, full insert sequence.
FL= gb:AK060725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6137010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61310OsAffx.23881.1.S1_x_at11/111+35800544..35801182hypothetical protein
LOC_Os01g61320Os.8865.4.S1_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.4.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61320Os.8865.2.S1_x_at11/111+35804267..35806360expressed protein
LOC_Os01g61330Os.37113.1.S1_at11/111+35806920..35809034MSP domain containing protein, expressed
LOC_Os01g61340OsAffx.23882.1.S1_at10/111+35815856..35817124hypothetical protein
LOC_Os01g61350Os.24385.1.S1_at11/111+35818759..35819770Glutaredoxin family protein, expressed
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29834.2.S1_at--632--9651Chr01:35824375..35824399 (25 bp)
TCACCCTACGCGACGCAATGCAGGA
LOC_Os01g61370
Os.29834.2.S1_at--75--2751Chr01:35824229..35824253 (25 bp)
AAGAAGTACTGCACCGACGCACGGA
LOC_Os01g61370
Os.29834.2.S1_at--485--4231Chr01:35824216..35824240 (25 bp)
CCGACGCACGGAAGGCTCTGAGCAA
LOC_Os01g61370
Os.29834.2.S1_at--168--1491Chr01:35824196..35824220 (25 bp)
AGCAAGCTGTCCATCGGGTTAGGAA
LOC_Os01g61370
Os.29834.2.S1_at--827--931Chr01:35824124..35824148 (25 bp)
AGGAAGTGCGGCAAGCAGGACCCCT
LOC_Os01g61370
Os.29834.2.S1_at--601--2691Chr01:35824073..35824097 (25 bp)
AAGCTGACGCAGCTCAGGACTAGCA
LOC_Os01g61370
Os.29834.2.S1_at--410--5511Chr01:35824007..35824031 (25 bp)
GAACAACTGCGCGTGGAGCATGTAT
LOC_Os01g61370
Os.29834.2.S1_at--489--4951Chr01:35823976..35824000 (25 bp)
GCATTTATGTAGGACTGCTCTCATC
LOC_Os01g61370
Os.29834.2.S1_at--955--9091Chr01:35823961..35823985 (25 bp)
TGCTCTCATCTCCTGACAGCTAGAA
LOC_Os01g61370
Os.29834.2.S1_at--1122--811Chr01:35823880..35823904 (25 bp)
ATGGTATTTATCTTTGCAACTATTG
LOC_Os01g61370
Os.29834.2.S1_at--1051--8551Chr01:35823832..35823856 (25 bp)
TGGATGTTTTGTGTTACTGTGGCGA
NONE
Target Sequence 
TCACCCTACGCGACGCAATGCAGGAGGAGAACAAGACCGGCAGCGGCGGCCGAGACTTGCCGCGGCCGCGTGGCGAGAAG
AGGAGCCGCGAGGAATGGCAGGCCGCAAGCCGTGGATGGGGCGTGTCGTCGCTGCTCGACGCGAGCAAGAAGTACTGCAC
CGACGCACGGAAGGCTCTGAGCAAGCTGTCCATCGGGTTAGGAACGGACAGCGGCAGTGGCAGTGGCAGCCCGAGAGTTG
GCAGCAGGGAGAGGAAGTGCGGCAAGCAGGACCCCTCNTCGACGATGCCGGCCATGGCCACCAAGCTGACGCAGCTCAGG
ACTAGCAGAAACTAAGGTCAGATCATTCAGATTGATCGGTAGTTGCAAGAACAACTGCGCGTGGAGCATGTATATCTATG
CATTTATGTAGGACTGCTCTCATCTCCTGACAGCTAGAATAAATCAGATGTGCCTATAAACATGTTAATCATGGTGTTAT
GCCTATNAAGTAATTATGGTATTTATCTTTGCAACTATTGATATGATCTTTTTAGGATTGTAATGGATGTTTTGTGTTAC
TGTGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29834.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis