Browse Element(s) Details


Os.29859.1.S1_at

Description gb:AK109746.1
DB_XREF= gi:32994955
TID=Os.29859.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29859 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative benzoyl coenzyme A: benzyl alcohol benzoyl transferase (OJ1341_A08.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-F02, full insert sequence.
FL= gb:AK109746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1408011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14030OsAffx.28437.1.S1_s_at11/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14030OsAffx.28437.3.S1_s_at1/117+8007631..8008161Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os07g14040Os.54287.1.S1_at2/117+8011433..8013743hypothetical protein
LOC_Os07g14050NANA7+8015154..8017947retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14060Os.31497.2.S1_x_at1/117+8018079..8020852retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14070OsAffx.28437.3.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.1.S1_s_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.2.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.28437.3.S1_at11/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070Os.7975.1.S1_x_at1/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14070OsAffx.31576.1.S1_at1/117+8021848..8024046SCP-like extracellular protein
LOC_Os07g14080Os.29859.1.S1_at11/117+8031063..8032877Transferase family protein, expressed
LOC_Os07g14090Os.21241.1.S1_at11/117+8035809..8041065MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os07g14100Os.6180.1.S1_at10/117+8041797..8043495pentatricopeptide, putative, expressed
LOC_Os07g14110OsAffx.28408.2.S1_at11/117+8052066..8053836Myb-like DNA-binding domain containing protein
LOC_Os07g14120OsAffx.16255.1.S1_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.16255.1.S1_x_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.31441.1.S1_x_at3/117+8057234..8058666agmatine coumaroyltransferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29859.1.S1_at--223--4551Chr07:8031516..8031540 (25 bp)
GCCCTCGCACGCTTGGTATGGAGTG
LOC_Os07g14080
Os.29859.1.S1_at--328--10111Chr07:8031500..8031524 (25 bp)
TATGGAGTGAGCTACTTGATCGCCG
LOC_Os07g14080
Os.29859.1.S1_at--216--3391Chr07:8031371..8031395 (25 bp)
CAGCGTGGACACTTTCGGGTTCAAA
LOC_Os07g14080
Os.29859.1.S1_at--1052--7671Chr07:8031355..8031379 (25 bp)
GGGTTCAAACAACTAGCCGCATTTA
LOC_Os07g14080
Os.29859.1.S1_at--636--9971Chr07:8031342..8031366 (25 bp)
TAGCCGCATTTAGTTTTTGACCAAA
LOC_Os07g14080
Os.29859.1.S1_at--593--3111Chr07:8031318..8031342 (25 bp)
AATATCCTTGCATATGTCGCAGTTT
LOC_Os07g14080
Os.29859.1.S1_at--55--10191Chr07:8031231..8031255 (25 bp)
TATACCTCGTTCACATGGCAAATGT
LOC_Os07g14080
Os.29859.1.S1_at--1069--5311Chr07:8031199..8031223 (25 bp)
GAAGTTGCATCTGTCGGGTTTTAAA
LOC_Os07g14080
Os.29859.1.S1_at--133--2271Chr07:8031147..8031171 (25 bp)
AAATAAGCTTGCATCTGTCGCCTTG
LOC_Os07g14080
Os.29859.1.S1_at--811--4971Chr07:8031137..8031161 (25 bp)
GCATCTGTCGCCTTGTGAAATTTCA
LOC_Os07g14080
Os.29859.1.S1_at--238--9891Chr07:8031076..8031100 (25 bp)
TACTACTCCCTCGTGTTTTGAAAAG
LOC_Os07g14080
Target Sequence 
GCCCTCGCACGCTTGGTATGGAGTGAGCTACTTGATCGCCGTCAAGAACGGCGCCGGGGAAGATGGTGTGGCCGTGCCGG
TCGTGCTGCCGGCGGCGGCCATGGAGCGGTTCACGTCGGAGATTGAAAGGCTGCGCAAGGGTCAGCAGCGTGGACACTTT
CGGGTTCAAACAACTAGCCGCATTTAGTTTTTGACCAAAATATCCTTGCATATGTCGCAGTTTGCATTTTTCTAATAGCT
ACTTCTACCATATTATATTATATTTGTTGTCATATTTTTCTAAAATATACCTCGTTCACATGGCAAATGTCGCAATAGAA
GTTGCATCTGTCGGGTTTTAAAAACTAGCCGAATTTAGTTGTTTGACCAAAATAAGCTTGCATCTGTCGCCTTGTGAAAT
TTCAATGTCGAATACTTTTTTTAATAGTCCCATTAGAAATTACTACTCCCTCGTGTTTTGAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis