Browse Element(s) Details


OsAffx.16255.1.S1_x_at

Description tigr:9635.m01398
TID=OsAffx.16255.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1412011/11agmatine coumaroyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14080Os.29859.1.S1_at11/117+8031063..8032877Transferase family protein, expressed
LOC_Os07g14090Os.21241.1.S1_at11/117+8035809..8041065MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os07g14100Os.6180.1.S1_at10/117+8041797..8043495pentatricopeptide, putative, expressed
LOC_Os07g14110OsAffx.28408.2.S1_at11/117+8052066..8053836Myb-like DNA-binding domain containing protein
LOC_Os07g14120OsAffx.16255.1.S1_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.16255.1.S1_x_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.31441.1.S1_x_at3/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14130OsAffx.16256.1.S1_at11/117+8062127..8062717pectinesterase inhibitor domain containing protein
LOC_Os07g14140OsAffx.5327.1.S1_at11/117+8063511..8064524hypothetical protein
LOC_Os07g14150Os.23405.1.S1_at11/117+8073942..8076504Guanine deaminase, putative, expressed
LOC_Os07g14160Os.38192.1.S1_at10/117+8077213..8081104Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16255.1.S1_x_at--39--3911Chr07:8058179..8058203 (25 bp)
CTGGTCCCGGCGATGTGCGGCTACT
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--604--4851Chr07:8058198..8058222 (25 bp)
GCTACTGCGGCAACGTGACGTCGTA
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--469--1911Chr07:8058210..8058234 (25 bp)
ACGTGACGTCGTACGCTCTCGGCGA
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--1124--5751Chr07:8058214..8058238 (25 bp)
GACGTCGTACGCTCTCGGCGACGCG
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--1132--1351Chr07:8058294..8058318 (25 bp)
AGAGCATCGCGTCGATCGACTACGA
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--312--9371Chr07:8058309..8058333 (25 bp)
TCGACTACGACGAGTACCTGCAGGA
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--1075--5111Chr07:8058355..8058441 (25 bp)
GCACAAGACGGAGAAGACGGTGTTC
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--1001--9411Chr07:8058467..8058491 (25 bp)
TCGGGTTCGGCCAGGCGGCGCTCGC
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--395--9171Chr07:8058494..8058518 (25 bp)
TGCCCATCTGGGACCACGGCAAGAT
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--708--1711Chr07:8058506..8058530 (25 bp)
ACCACGGCAAGATGGGCTGCGGGAC
LOC_Os07g14120
OsAffx.16255.1.S1_x_at--967--4791Chr07:8058609..8058633 (25 bp)
GCTCGAGTCCGACGGCGTCTTCAAG
LOC_Os07g14120
Target Sequence 
CTGGTCCCGGCGATGTGCGGCTACTGCGGCAACGTGACGTCGTACGCTCTCGGCGACGCGGCCGTGGGGGAGGTCCTGGA
GAGGCCGCTGGCGGAGGTGGCGGCCATGGTGCGGGAGAGCATCGCGTCGATCGACTACGACGAGTACCTGCAGGAGCTGG
TGGACTGGGTGGTGGGGCACAAGACGGAGAAGACGGTGTTCGCGTCGTTCCCGCTCGACACCGACTTCGGGTTCGGCCAG
GCGGCGCTCGCCATGCCCATCTGGGACCACGGCAAGATGGGCTGCGGGACGCTGGCCGTCGGAGTGCGCCCGGGAGGCGA
CGGGTCGTGGCTCGTGAGCGCCTACATATGGCCGCGGATGGCGGCGGCGCTCGAGTCCGACGGCGTCTTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16255.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis