Browse Element(s) Details


OsAffx.5327.1.S1_at

Description tigr:9635.m01400
TID=OsAffx.5327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1414011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14090Os.21241.1.S1_at11/117+8035809..8041065MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os07g14100Os.6180.1.S1_at10/117+8041797..8043495pentatricopeptide, putative, expressed
LOC_Os07g14110OsAffx.28408.2.S1_at11/117+8052066..8053836Myb-like DNA-binding domain containing protein
LOC_Os07g14120OsAffx.16255.1.S1_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.16255.1.S1_x_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.31441.1.S1_x_at3/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14130OsAffx.16256.1.S1_at11/117+8062127..8062717pectinesterase inhibitor domain containing protein
LOC_Os07g14140OsAffx.5327.1.S1_at11/117+8063511..8064524hypothetical protein
LOC_Os07g14150Os.23405.1.S1_at11/117+8073942..8076504Guanine deaminase, putative, expressed
LOC_Os07g14160Os.38192.1.S1_at10/117+8077213..8081104Polygalacturonase family protein, expressed
LOC_Os07g14170NANA7+8088044..8088712hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5327.1.S1_at--788--3951Chr07:8064409..8064433 (25 bp)
CGGAGACGTGCGTGCGGACGATGCA
LOC_Os07g14140
OsAffx.5327.1.S1_at--597--3391Chr07:8064386..8064410 (25 bp)
CAGCGGATGCTGTCGTGCCTGGACT
LOC_Os07g14140
OsAffx.5327.1.S1_at--1119--8711Chr07:8064376..8064400 (25 bp)
TGTCGTGCCTGGACTTCATCGAGCA
LOC_Os07g14140
OsAffx.5327.1.S1_at--576--8531Chr07:8064367..8064391 (25 bp)
TGGACTTCATCGAGCACCGCACCGA
LOC_Os07g14140
OsAffx.5327.1.S1_at--174--2731Chr07:8064296..8064320 (25 bp)
AAGCAGCCGTGCTGCCTGATGCACG
LOC_Os07g14140
OsAffx.5327.1.S1_at--570--4471Chr07:8064283..8064307 (25 bp)
GCCTGATGCACGTCCTGCACGGCGA
LOC_Os07g14140
OsAffx.5327.1.S1_at--244--8211Chr07:8063805..8063829 (25 bp)
GGAATATCCGTTTACCACCGGAGTG
LOC_Os07g14140
OsAffx.5327.1.S1_at--910--151Chr07:8063802..8063826 (25 bp)
ATATCCGTTTACCACCGGAGTGCCG
LOC_Os07g14140
OsAffx.5327.1.S1_at--1139--3871Chr07:8063558..8063582 (25 bp)
CTGGAGGGCACGTCGAACACCGCGC
LOC_Os07g14140
OsAffx.5327.1.S1_at--800--5491Chr07:8063544..8063568 (25 bp)
GAACACCGCGCTGTTATTTGCACTT
LOC_Os07g14140
OsAffx.5327.1.S1_at--998--3351Chr07:8063541..8063565 (25 bp)
CACCGCGCTGTTATTTGCACTTGGG
LOC_Os07g14140
Target Sequence 
CGGAGACGTGCGTGCGGACGATGCAGCGGATGCTGTCGTGCCTGGACTTCATCGAGCACCGCACCGACGCGGTGCCGCGG
CCGTGCTGCGCGCAGCTGAACGCCACCGTCGCCAAGCAGCCGTGCTGCCTGATGCACGTCCTGCACGGCGACGTGGCGCG
GCTCGTCGGCCCGGGGTTCGACACCGCGCGCGCCATGGTCAACGTCACCGCCGCCTGCCTCGGCGACGCCTCCGTCCTCA
TGTCCATCGCCCGCTCTTGCGCCGGCAAGCCGCTGCCGCCACTTACGCCGGAATATCCGTTTACCACCGGAGTGCCGCCG
GCGCCTCCGCAGACATCCGGAGCGACGCGGCTGGAGGGCACGTCGAACACCGCGCTGTTATTTGCACTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis