Browse Element(s) Details


OsAffx.28408.2.S1_at

Description tigr:9635.m01397
TID=OsAffx.28408.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1411011/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14080Os.29859.1.S1_at11/117+8031063..8032877Transferase family protein, expressed
LOC_Os07g14090Os.21241.1.S1_at11/117+8035809..8041065MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os07g14100Os.6180.1.S1_at10/117+8041797..8043495pentatricopeptide, putative, expressed
LOC_Os07g14110OsAffx.28408.2.S1_at11/117+8052066..8053836Myb-like DNA-binding domain containing protein
LOC_Os07g14120OsAffx.16255.1.S1_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.16255.1.S1_x_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.31441.1.S1_x_at3/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14130OsAffx.16256.1.S1_at11/117+8062127..8062717pectinesterase inhibitor domain containing protein
LOC_Os07g14140OsAffx.5327.1.S1_at11/117+8063511..8064524hypothetical protein
LOC_Os07g14150Os.23405.1.S1_at11/117+8073942..8076504Guanine deaminase, putative, expressed
LOC_Os07g14160Os.38192.1.S1_at10/117+8077213..8081104Polygalacturonase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28408.2.S1_at--1121--5431Chr07:8053341..8053365 (25 bp)
GAACCGTTGGTCAGCGATTGCCAGG
LOC_Os07g14110
OsAffx.28408.2.S1_at--501--5971Chr07:8053384..8053408 (25 bp)
GAGAACACCGTCAAGAACCGCTGGA
LOC_Os07g14110
OsAffx.28408.2.S1_at--68--5451Chr07:8053398..8053422 (25 bp)
GAACCGCTGGAACGCGACCAAGCGA
LOC_Os07g14110
OsAffx.28408.2.S1_at--490--3811Chr07:8053489..8053513 (25 bp)
CTCCTCGAAGAGTACATCCGTAGCT
LOC_Os07g14110
OsAffx.28408.2.S1_at--497--3591Chr07:8053553..8053577 (25 bp)
CATTCGATATCGGTGGGTACGGTAC
LOC_Os07g14110
OsAffx.28408.2.S1_at--723--2131Chr07:8053612..8053636 (25 bp)
ACAGTGCATGCGTTGGGTGGATCTA
LOC_Os07g14110
OsAffx.28408.2.S1_at--1158--7951Chr07:8053630..8053654 (25 bp)
GGATCTACTCCACTAGGGTTGGTGA
LOC_Os07g14110
OsAffx.28408.2.S1_at--579--8871Chr07:8053652..8053676 (25 bp)
TGATGTTCCTTGACCTACTTAACCA
LOC_Os07g14110
OsAffx.28408.2.S1_at--773--8791Chr07:8053712..8053736 (25 bp)
TGTTGAACATAACACCGGTGGTGCC
LOC_Os07g14110
OsAffx.28408.2.S1_at--933--5231Chr07:8053753..8053777 (25 bp)
GAATACTGCCTACAGCTCGATGCGA
LOC_Os07g14110
OsAffx.28408.2.S1_at--862--5151Chr07:8053781..8053805 (25 bp)
GCAACTGTAGTATGGCCAGCTGCCG
LOC_Os07g14110
Target Sequence 
GAACCGTTGGTCAGCGATTGCCAGGTCGCTCCCCGGCCGGTCGGAGAACACCGTCAAGAACCGCTGGAACGCGACCAAGC
GAAGCCTAAACTCAAAGCGCCGACTGAGGAAGAAAAACAATGAGCAAGCAGTGCCAAGGCAGCCTTCCCTCCTCGAAGAG
TACATCCGTAGCTGCCAGCACCCACTGCCCAATGAGACAGCACCACCCGCATCATTCGATATCGGTGGGTACGGTACCGG
TGGGACGATCGGTGCAAGTCCAACCCCACCCACAGTGCATGCGTTGGGTGGATCTACTCCACTAGGGTTGGTGATGTTCC
TTGACCTACTTAACCAGGCTACACCGCACCCACCACAGCCAGACTTGAACTTGTTGAACATAACACCGGTGGTGCCACAT
CTCAACACTAGTGAATACTGCCTACAGCTCGATGCGAGGGGCAACTGTAGTATGGCCAGCTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28408.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis