Browse Element(s) Details


Os.29967.1.S1_at

Description gb:AY434734.1
DB_XREF= gi:38112688
GEN=ETR4
TID=Os.29967.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29967 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative ethylene receptor (ETR4) mRNA, complete cds.
PROD=putative ethylene receptor
FL= gb:AY434734.1 gb:AK109593.1 gb:AF497626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1554011/11GAF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15470NANA7+8972971..8978663retrotransposon protein, putative, unclassified
LOC_Os07g15480NANA7+8979594..8981217hypothetical protein
LOC_Os07g15490Os.18530.1.S1_at11/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_x_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15500OsAffx.28461.1.S1_at11/117+8992346..8995512OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os07g15510Os.34643.1.S1_at1/117+8996899..8999625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15520NANA7+9000605..9001033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15530Os.10688.1.S1_at2/117+9002297..9002524expressed protein
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein
LOC_Os07g15590OsAffx.22394.2.S1_at10/117+9030075..9032765hypothetical protein
LOC_Os07g15590OsAffx.22394.1.S1_at7/117+9030075..9032765hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009625biological_processresponse to insect
GO:0009690biological_processcytokinin metabolism
GO:0009727biological_processdetection of ethylene stimulus
GO:0009733biological_processresponse to auxin stimulus
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0010182biological_processsugar mediated signaling
GO:0005783cellular_componentendoplasmic reticulum
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0000156molecular_functiontwo-component response regulator activity
GO:0004673molecular_functionprotein histidine kinase activity
GO:0004696molecular_functionglycogen synthase kinase 3 activity
GO:0004872molecular_functionreceptor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29967.1.S1_at--684--1611Chr07:9003910..9003934 (25 bp)
AGCTGTGCCAGCGTGCCGGGATCAA
LOC_Os07g15540
Os.29967.1.S1_at--345--8151Chr07:9003822..9003846 (25 bp)
GGACAACTGATGATGCTGCCTGCAA
LOC_Os07g15540
Os.29967.1.S1_at--506--4971Chr07:9003755..9003779 (25 bp)
GCATCATGCAATCTACTACCAGGTA
LOC_Os07g15540
Os.29967.1.S1_at--146--1191Chr07:9003708..9003732 (25 bp)
AGTACCGTATTGCTGTCTCTTTATC
LOC_Os07g15540
Os.29967.1.S1_at--599--10411Chr07:9003688..9003712 (25 bp)
TTATCATGGTGTTGCATCTGCCGGC
LOC_Os07g15540
Os.29967.1.S1_at--87--4451Chr07:9003665..9003689 (25 bp)
GCCTTTTGCTTCGTTCATTTACCGA
LOC_Os07g15540
Os.29967.1.S1_at--746--3151Chr07:9003598..9003622 (25 bp)
AATTCCGGCCAAGCTGGTGTCTGAA
LOC_Os07g15540
Os.29967.1.S1_at--702--3851Chr07:9003578..9003602 (25 bp)
CTGAAGCCGTGCTAGCAGTCTTTTA
LOC_Os07g15540
Os.29967.1.S1_at--414--5031Chr07:9003564..9003588 (25 bp)
GCAGTCTTTTAGTTAGCACGGCTCT
LOC_Os07g15540
Os.29967.1.S1_at--117--1731Chr07:9003535..9003559 (25 bp)
ACCAGTTCATCTCGTGTACTCGATA
LOC_Os07g15540
Os.29967.1.S1_at--139--6471Chr07:9003514..9003538 (25 bp)
GATAATCATCTCGTGTACTCATATT
LOC_Os07g15540
Target Sequence 
AGCTGTGCCAGCGTGCCGGGATCAACGGGCTGGTCCAGAAACCGGTCACGCTGCCGGCACTGGGAGCTCAGCTCTGCCGA
GTGCTCCAGGACAACTGATGATGCTGCCTGCAATGGAGTGTGTACCGAAAAGAGCAAGGACTGAAATTGGTAGATGCATC
ATGCAATCTACTACCAGGTAGTAGAAGAAAACTGGAATGTACAGTACCGTATTGCTGTCTCTTTATCATGGTGTTGCATC
TGCCGGCCTTTTGCTTCGTTCATTTACCGAATTTGCTGGATGATTATCGAATTTGTCTGAACAACATCATGTAATTCCGG
CCAAGCTGGTGTCTGAAGCCGTGCTAGCAGTCTTTTAGTTAGCACGGCTCTAGACACCAGTTCATCTCGTGTACTCGATA
ATCATCTCGTGTACTCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis