Browse Element(s) Details


Os.29979.1.S1_at

Description gb:AY341854.1
DB_XREF= gi:33519195
TID=Os.29979.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.29979 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) WRKY13 mRNA, complete cds.
PROD=WRKY13
FL= gb:AY341854.1 gb:AK109578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0910011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09090OsAffx.1963.1.S1_at11/111+4568493..4569020hypothetical protein
LOC_Os01g09100Os.29979.1.S1_at11/111+4569367..4570211WRKY DNA binding domain containing protein, expressed
LOC_Os01g09110NANA1+4572514..4572957hypothetical protein
LOC_Os01g09120Os.26449.1.S1_at11/111+4578009..4581492PAS domain S-box family protein, expressed
LOC_Os01g09130OsAffx.1964.2.S1_s_at11/111+4583888..4584637hypothetical protein
LOC_Os01g09140OsAffx.1965.1.S1_at11/111+4587722..4588174hypothetical protein
LOC_Os01g09150OsAffx.10980.1.S1_at11/111+4592862..4593614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29979.1.S1_at--603--9331Chr01:4569912..4569936 (25 bp)
TCGCCGGCGGGAACAATGATCAGTA
LOC_Os01g09100
Os.29979.1.S1_at--489--2991Chr01:4569898..4569922 (25 bp)
AATGATCAGTATGGCGTGTCGTCGT
LOC_Os01g09100
Os.29979.1.S1_at--309--10511Chr01:4569799..4569823 (25 bp)
TTCAAGTGGCGAAAGTACGGGAAGA
LOC_Os01g09100
Os.29979.1.S1_at--25--2951Chr01:4569775..4569799 (25 bp)
AAGGCGGTGAAGAGCAGCCCGAACC
LOC_Os01g09100
Os.29979.1.S1_at--63--3331Chr01:4569490..4569514 (25 bp)
CACTCGTCGGAATCGTCGTTCTGAA
LOC_Os01g09100
Os.29979.1.S1_at--499--9371Chr01:4569475..4569499 (25 bp)
TCGTTCTGAACGCTGAATTTACTTC
LOC_Os01g09100
Os.29979.1.S1_at--152--8991Chr01:4569469..4569493 (25 bp)
TGAACGCTGAATTTACTTCTGTTTT
LOC_Os01g09100
Os.29979.1.S1_at--967--8571Chr01:4569435..4569459 (25 bp)
TGGTTGCTTGTTAGTTGTACCGCCG
LOC_Os01g09100
Os.29979.1.S1_at--995--10751Chr01:4569428..4569452 (25 bp)
TTGTTAGTTGTACCGCCGTTCGTGA
LOC_Os01g09100
Os.29979.1.S1_at--737--4051Chr01:4569402..4569426 (25 bp)
CGATCGATCGGTTCTTGTATGCACT
LOC_Os01g09100
Os.29979.1.S1_at--1136--6891Chr01:4569386..4569410 (25 bp)
GTATGCACTAGACTTACTACTTAAA
LOC_Os01g09100
Target Sequence 
TCGCCGGCGGGAACAATGATCAGTATGGCGTGTCGTCGTCGTCGTCGGCGGCGGCGACGACGAGCAGGATCGGGTTCAGG
ACGAGGTCGGAGGTGGAGGTGCTGGACGACGGGTTCAAGTGGCGAAAGTACGGGAAGAAGGCGGTGAAGAGCAGCCCGAA
CCCGCGGAACTACTACCGGTGCTCGGCGGCGGGGTGCGGCGTCAAGAAGCGGGTGGAGCGCGACGGCGACGACCCGCGCT
ACGTCGTCACCACCTACGACGGCGTCCACAACCACGCGACCCCCGGCTGCGTCGGCGGCGGCGGCCACCTCCCGTACCCT
ACTTCCGCTGCGCCGCCGTGGAGCGTTCCGGCGGCGGCGGCCTCGCCGCCTCCCGCGCACGCGCAGGCGTGGGGGGCGCC
GCTGCACGCCGCCGCGGCGGCGCACTCGTCGGAATCGTCGTTCTGAACGCTGAATTTACTTCTGTTTTTGTTTTTCTTGG
TTGCTTGTTAGTTGTACCGCCGTTCGTGATCGATCGATCGGTTCTTGTATGCACTAGACTTACTACTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis