Browse Element(s) Details


Os.30376.1.S1_at

Description gb:AK108920.1
DB_XREF= gi:32994129
TID=Os.30376.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439B06.22 (P0439B06.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H07, full insert sequence.
FL= gb:AK108920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0213011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02100Os.35391.2.S1_x_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02100Os.35391.1.S1_at11/111+595092..598259hAT family dimerisation domain containing protein, expressed
LOC_Os01g02110Os.30617.1.S1_at11/111+600445..602445Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g02120Os.29115.1.S1_at11/111+609366..612433MOTHER of FT and TF1 protein, putative, expressed
LOC_Os01g02130Os.30376.1.S1_at11/111+617374..618318expressed protein
LOC_Os01g02140NANA1+620870..621289expressed protein
LOC_Os01g02150Os.1653.1.S1_at11/111+622788..623811expressed protein
LOC_Os01g02160OsAffx.350.1.S1_s_at11/111+628895..629715expressed protein
LOC_Os01g02170Os.33335.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_x_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53043.1.S1_at11/111+630813..636111expressed protein
LOC_Os01g02170Os.53712.1.S1_x_at1/111+630813..636111expressed protein
LOC_Os01g02180Os.37685.1.A1_at11/111+637399..641069expressed protein
LOC_Os01g02180Os.5620.2.S1_s_at10/111+637399..641069expressed protein
LOC_Os01g02190Os.31744.1.S1_at10/111+642417..643524Major intrinsic protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30376.1.S1_at--843--9611Chr01:617849..617873 (25 bp)
TCATGATGGGAGACAAGTGCCGGCC
LOC_Os01g02130
Os.30376.1.S1_at--68--8391Chr01:617773..617797 (25 bp)
GGCGACGACCATCAGCAAGGAAGCA
LOC_Os01g02130
Os.30376.1.S1_at--488--3371Chr01:617750..617774 (25 bp)
CAGCCAATGCGGATGCGGTCAACAA
LOC_Os01g02130
Os.30376.1.S1_at--477--5251Chr01:617646..617670 (25 bp)
GAATGACAACCTGCTGCGAAAACGT
LOC_Os01g02130
Os.30376.1.S1_at--560--7131Chr01:617583..617607 (25 bp)
GTCATAGTAGCACCTTAAGTCTTAG
LOC_Os01g02130
Os.30376.1.S1_at--971--7891Chr01:617559..617583 (25 bp)
GGTTGGACTCAAATTTTTCAGGATT
LOC_Os01g02130
Os.30376.1.S1_at--990--1852Chr10:21948204..21948333 (24 bp)
ACGACTTTATGCTTCAGTGGTAGAC
NONE
Os.30376.1.S1_at--801--5772Chr09:12829796..12830304 (25 bp)
GACGATGTACCCATCAATAGCGAGA
NONE
Os.30376.1.S1_at--738--6031Chr01:617489..617513 (25 bp)
GAGATGCCTATAATGACTTTGTCAA
LOC_Os01g02130
Os.30376.1.S1_at--1156--8551Chr01:617450..617474 (25 bp)
TGGTCCAGCCAGTGTCTTTATAGGA
LOC_Os01g02130
Os.30376.1.S1_at--1062--7472Chr02:25865165..25865221 (24 bp)
GTGTGTGTGCATTGTGAGTGTCTAT
NONE
Target Sequence 
TCATGATGGGAGACAAGTGCCGGCCGCTGCAGTTCTCCGGCCACATCGCCTATGACTCCGACGGCAACCAGCTGCCGGCG
ACGACCATCAGCAAGGAAGCAGCCAATGCGGATGCGGTCAACAATATTTATGTTTAACAATCATATGCATCGAGAGGAAA
AATAAATAATAGTAATTGTGTACATGAGATGCAGTGATGTACAGAATGACAACCTGCTGCGAAAACGTCGAAAAGGTCCA
TATTCTAGTGGTTACAACTTACAAGTGTCATAGTAGCACCTTAAGTCTTAGGTTGGACTCAAATTTTTCAGGATTTAACG
ACTTTATGCTTCAGTGGTAGACGATGTACCCATCAATAGCGAGATGCCTATAATGACTTTGTCAATTTACAGTATTTACT
GGTCCAGCCAGTGTCTTTATAGGAGTGAGTGTGTGTGCATTGTGAGTGTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis