Browse Element(s) Details


Os.30433.1.S1_at

Description gb:AK108853.1
DB_XREF= gi:32994062
TID=Os.30433.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503C12.20 (P0503C12.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A11, full insert sequence.
FL= gb:AK108853.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5511011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55100Os.19843.1.S1_at11/111+32026298..32028134TCP1 protein, putative, expressed
LOC_Os01g55110Os.30433.1.S1_at11/111+32037484..32038749Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g55120OsAffx.23797.1.S1_at11/111+32044890..32046656hypothetical protein
LOC_Os01g55130NANA1+32049066..32049407hypothetical protein
LOC_Os01g55140OsAffx.2336.2.S1_at10/111+32051125..32052091hypothetical protein
LOC_Os01g55150Os.55684.1.S1_at10/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55150OsAffx.9432.1.S1_at8/111+32054863..32057220bZIP transcription factor family protein, expressed
LOC_Os01g55160Os.34913.1.S1_at11/111+32058836..32059797expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0006952biological_processdefense response
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30433.1.S1_at--1159--511Chr01:32038093..32038117 (25 bp)
ATCGACAAGTGGCTCGCGTCCAGCT
LOC_Os01g55110
Os.30433.1.S1_at--838--9091Chr01:32038253..32038277 (25 bp)
TGCTCGGCGCGTCGCTAATGAAGAT
LOC_Os01g55110
Os.30433.1.S1_at--1081--2711Chr01:32038337..32038361 (25 bp)
AAGACTTGGAAAGCCAGCTGCCGCG
LOC_Os01g55110
Os.30433.1.S1_at--470--2491Chr01:32038367..32038391 (25 bp)
AACAGCAGTAGCATATGCGGCGAAT
LOC_Os01g55110
Os.30433.1.S1_at--910--4691Chr01:32038383..32038407 (25 bp)
GCGGCGAATAATCAGCGGCCATTTT
LOC_Os01g55110
Os.30433.1.S1_at--1075--9631Chr01:32038394..32038418 (25 bp)
TCAGCGGCCATTTTTAAGCCATTTT
LOC_Os01g55110
Os.30433.1.S1_at--162--10631Chr01:32038435..32038459 (25 bp)
TTCGTTTATACATCAAGCGTTCCAT
LOC_Os01g55110
Os.30433.1.S1_at--746--371Chr01:32038446..32038470 (25 bp)
ATCAAGCGTTCCATGTTGGTTCAGT
LOC_Os01g55110
Os.30433.1.S1_at--29--11Chr01:32038510..32038534 (25 bp)
AGAACGAAAGTTCTCCATTAGGTGT
LOC_Os01g55110
Os.30433.1.S1_at--650--7751Chr01:32038530..32038554 (25 bp)
GGTGTTTGGTGCTTGTAGCTGTCAA
LOC_Os01g55110
Os.30433.1.S1_at--759--1491Chr01:32038563..32038587 (25 bp)
AGCAGACCCGTCTCTTGTATTTGTA
LOC_Os01g55110
Target Sequence 
ATCGACAAGTGGCTCGCGTCCAGCTCGTCGTGCCCGGTCTGCCGCGCCGGGGTGGAGCCGCCGCCGCCGCCTCCGTCAAC
GGCGGCGGCGAGGTGCGTGCACGAGAAGCAGGACGCGGAGAAGGAGGAGGCGGCCGCCGGTAGCTCGGCGCCGGTGCGGG
TGCTCGGCGCGTCGCTAATGAAGATGCTGAGCAGGGAGAGACCGTCGCCGAGGAGGCAGCCGGGAGTCCACGCCGTGGAA
ATGGAAGACTTGGAAAGCCAGCTGCCGCGGCCGCAACAGCAGTAGCATATGCGGCGAATAATCAGCGGCCATTTTTAAGC
CATTTTTTGTTTCATTTTTTGCTTCGTTTATACATCAAGCGTTCCATGTTGGTTCAGTATGAACTACATAAGTGTGTAAG
TGTTTTTCTTTATTAGGAGAACGAAAGTTCTCCATTAGGTGTTTGGTGCTTGTAGCTGTCAAAGGAAAGGAGCAGACCCG
TCTCTTGTATTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis